miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12365 3' -57 NC_003324.1 + 2742 0.68 0.513481
Target:  5'- cGCGC-GCCCACAGUGGCgcaaucUCC-CGa -3'
miRNA:   3'- cCGUGuCGGGUGUCGUCGa-----AGGuGCg -5'
12365 3' -57 NC_003324.1 + 35372 0.69 0.442996
Target:  5'- cGGCcugugcugcuGCAGCCUGCu-CGGCcgCCGCGCg -3'
miRNA:   3'- -CCG----------UGUCGGGUGucGUCGaaGGUGCG- -5'
12365 3' -57 NC_003324.1 + 50443 0.69 0.45274
Target:  5'- uGGUGCAGCUCGCAG-GGCU---GCGCg -3'
miRNA:   3'- -CCGUGUCGGGUGUCgUCGAaggUGCG- -5'
12365 3' -57 NC_003324.1 + 54585 0.69 0.45274
Target:  5'- gGGCGCGGCCga-GGUGGCUgaaCUACGUc -3'
miRNA:   3'- -CCGUGUCGGgugUCGUCGAa--GGUGCG- -5'
12365 3' -57 NC_003324.1 + 27261 0.68 0.4626
Target:  5'- --aGCGGCCgaACA-CGGCUUCCGCGUu -3'
miRNA:   3'- ccgUGUCGGg-UGUcGUCGAAGGUGCG- -5'
12365 3' -57 NC_003324.1 + 2700 0.68 0.4626
Target:  5'- gGGCACGauGUCgGCGGCGGCagucUCCAaGCg -3'
miRNA:   3'- -CCGUGU--CGGgUGUCGUCGa---AGGUgCG- -5'
12365 3' -57 NC_003324.1 + 31515 0.68 0.466575
Target:  5'- uGGuCGCAGUCCGCcGUccucgucgugagaauGGCcgCCACGCg -3'
miRNA:   3'- -CC-GUGUCGGGUGuCG---------------UCGaaGGUGCG- -5'
12365 3' -57 NC_003324.1 + 14572 0.68 0.481637
Target:  5'- gGGuCGCGGCCUGCcggcgcaAGCGGCcggCgGCGCa -3'
miRNA:   3'- -CC-GUGUCGGGUG-------UCGUCGaa-GgUGCG- -5'
12365 3' -57 NC_003324.1 + 6522 0.68 0.50311
Target:  5'- cGCugAG-CCACGGCAGggUCUGCGa -3'
miRNA:   3'- cCGugUCgGGUGUCGUCgaAGGUGCg -5'
12365 3' -57 NC_003324.1 + 14196 0.69 0.442996
Target:  5'- aGGuCACAGa--ACAGCAGCUuggCUugGCg -3'
miRNA:   3'- -CC-GUGUCgggUGUCGUCGAa--GGugCG- -5'
12365 3' -57 NC_003324.1 + 26053 0.69 0.433372
Target:  5'- cGGCGCucuAGCUCAagcGCGGCUU-CGCGCc -3'
miRNA:   3'- -CCGUG---UCGGGUgu-CGUCGAAgGUGCG- -5'
12365 3' -57 NC_003324.1 + 1670 0.69 0.433372
Target:  5'- uGCugAcGCUgACGGCGGUUcgUCCugGCa -3'
miRNA:   3'- cCGugU-CGGgUGUCGUCGA--AGGugCG- -5'
12365 3' -57 NC_003324.1 + 14799 0.75 0.181427
Target:  5'- cGGCgaagaacGCGGCCgGCaucGGCAGCUUCCugGg -3'
miRNA:   3'- -CCG-------UGUCGGgUG---UCGUCGAAGGugCg -5'
12365 3' -57 NC_003324.1 + 44318 0.74 0.224825
Target:  5'- uGGCGCGGCCgAUAGCcucuGCagCCACGg -3'
miRNA:   3'- -CCGUGUCGGgUGUCGu---CGaaGGUGCg -5'
12365 3' -57 NC_003324.1 + 4909 0.73 0.243014
Target:  5'- cGCuuuCGGCuCCGCAgGCGGCUUCCGCu- -3'
miRNA:   3'- cCGu--GUCG-GGUGU-CGUCGAAGGUGcg -5'
12365 3' -57 NC_003324.1 + 9502 0.72 0.26915
Target:  5'- uGGCACGGCCgGCGGCAcCaa-CAUGCa -3'
miRNA:   3'- -CCGUGUCGGgUGUCGUcGaagGUGCG- -5'
12365 3' -57 NC_003324.1 + 49419 0.72 0.276028
Target:  5'- cGGCG-AGCCCgGCAGCGGCg-CUugGCu -3'
miRNA:   3'- -CCGUgUCGGG-UGUCGUCGaaGGugCG- -5'
12365 3' -57 NC_003324.1 + 14500 0.71 0.335327
Target:  5'- cGGUGCAGCCaacacugCGCGGCAGggcgUCCGCGa -3'
miRNA:   3'- -CCGUGUCGG-------GUGUCGUCga--AGGUGCg -5'
12365 3' -57 NC_003324.1 + 39182 0.71 0.344286
Target:  5'- uGGCGCAG-CCACGGCGGCaaCCGaucauagGCg -3'
miRNA:   3'- -CCGUGUCgGGUGUCGUCGaaGGUg------CG- -5'
12365 3' -57 NC_003324.1 + 21067 0.71 0.351744
Target:  5'- cGGCAaacgcugccuuguCGGCCgcCGCGGCgcgugcugcgucGGCUUCCACGUc -3'
miRNA:   3'- -CCGU-------------GUCGG--GUGUCG------------UCGAAGGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.