miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12365 3' -57 NC_003324.1 + 9101 0.67 0.523939
Target:  5'- cGGCAaacGCCUuuGCGGUGGUUccuugcugUCCACGCc -3'
miRNA:   3'- -CCGUgu-CGGG--UGUCGUCGA--------AGGUGCG- -5'
12365 3' -57 NC_003324.1 + 27646 0.66 0.630662
Target:  5'- uGCGCgaaaauaugcgugAGCCgGCAGCcgAGCccgaaacaggUCCGCGCg -3'
miRNA:   3'- cCGUG-------------UCGGgUGUCG--UCGa---------AGGUGCG- -5'
12365 3' -57 NC_003324.1 + 14002 0.66 0.609907
Target:  5'- cGGCACucGCuCCGCAGCA--UUCCAUa- -3'
miRNA:   3'- -CCGUGu-CG-GGUGUCGUcgAAGGUGcg -5'
12365 3' -57 NC_003324.1 + 31319 0.67 0.577298
Target:  5'- aGUGCGGCCgGCGGC-GCUggCgCugGCg -3'
miRNA:   3'- cCGUGUCGGgUGUCGuCGAa-G-GugCG- -5'
12365 3' -57 NC_003324.1 + 14432 0.67 0.566506
Target:  5'- uGGauacguCGGCCCGCGcuucuGCAGCUgCCuCGCu -3'
miRNA:   3'- -CCgu----GUCGGGUGU-----CGUCGAaGGuGCG- -5'
12365 3' -57 NC_003324.1 + 48202 0.66 0.597918
Target:  5'- uGCGCagguuguacuugaAGUCCGCuucgAGCAGCagCCACGUc -3'
miRNA:   3'- cCGUG-------------UCGGGUG----UCGUCGaaGGUGCG- -5'
12365 3' -57 NC_003324.1 + 29327 0.67 0.577298
Target:  5'- cGGCGaugcaGGCCCgaACAGCcGCcgUCUugGUg -3'
miRNA:   3'- -CCGUg----UCGGG--UGUCGuCGa-AGGugCG- -5'
12365 3' -57 NC_003324.1 + 2275 0.67 0.577298
Target:  5'- aGGUuuuuccuCGGCCCcgugAGCAGCUcCUGCGCu -3'
miRNA:   3'- -CCGu------GUCGGGug--UCGUCGAaGGUGCG- -5'
12365 3' -57 NC_003324.1 + 15140 0.67 0.545088
Target:  5'- uGCACAGCCUucaucguCAGCccaauGGCgUCCuGCGCc -3'
miRNA:   3'- cCGUGUCGGGu------GUCG-----UCGaAGG-UGCG- -5'
12365 3' -57 NC_003324.1 + 30758 0.68 0.48265
Target:  5'- uGGUuuGGCCCGgcGUGGCgcgaUCCGCGCa -3'
miRNA:   3'- -CCGugUCGGGUguCGUCGa---AGGUGCG- -5'
12365 3' -57 NC_003324.1 + 29924 1.13 0.000337
Target:  5'- cGGCACAGCCCACAGCAGCUUCCACGCc -3'
miRNA:   3'- -CCGUGUCGGGUGUCGUCGAAGGUGCG- -5'
12365 3' -57 NC_003324.1 + 20771 0.67 0.577298
Target:  5'- cGGCGCaacggAGCUCGaagAGaCGGCUUCCAaGCa -3'
miRNA:   3'- -CCGUG-----UCGGGUg--UC-GUCGAAGGUgCG- -5'
12365 3' -57 NC_003324.1 + 48831 0.66 0.588134
Target:  5'- aGCGCuucgcugauGGCCUGCAGCcuGCUggcgCCgACGCg -3'
miRNA:   3'- cCGUG---------UCGGGUGUCGu-CGAa---GG-UGCG- -5'
12365 3' -57 NC_003324.1 + 20203 0.67 0.545088
Target:  5'- uGCAUAGCUCuCAaCGGCUUCUcgucgACGCg -3'
miRNA:   3'- cCGUGUCGGGuGUcGUCGAAGG-----UGCG- -5'
12365 3' -57 NC_003324.1 + 35458 0.67 0.545088
Target:  5'- cGGCcgaGCAGgCUGCAGCAGCacaggccgaCCAgGCa -3'
miRNA:   3'- -CCG---UGUCgGGUGUCGUCGaa-------GGUgCG- -5'
12365 3' -57 NC_003324.1 + 21300 0.67 0.577298
Target:  5'- cGCGCcgucGCCUuCGGCAGCUcgaaagCCAgGCg -3'
miRNA:   3'- cCGUGu---CGGGuGUCGUCGAa-----GGUgCG- -5'
12365 3' -57 NC_003324.1 + 49855 0.68 0.492831
Target:  5'- cGGuCAguGUUCACGaagacuGCAGCgUUCCACGUg -3'
miRNA:   3'- -CC-GUguCGGGUGU------CGUCG-AAGGUGCG- -5'
12365 3' -57 NC_003324.1 + 28811 0.68 0.48265
Target:  5'- cGGCGCGGgaaCUGCAGagcaGGUUUCgGCGCc -3'
miRNA:   3'- -CCGUGUCg--GGUGUCg---UCGAAGgUGCG- -5'
12365 3' -57 NC_003324.1 + 42242 0.67 0.577298
Target:  5'- cGGCaaguacgaucGCGGCCCAUGGUcuguuGCUgaUCCcCGCg -3'
miRNA:   3'- -CCG----------UGUCGGGUGUCGu----CGA--AGGuGCG- -5'
12365 3' -57 NC_003324.1 + 16218 0.67 0.555767
Target:  5'- uGGCGCGGCCC-CcGCuaccgaAGCgccCUGCGCa -3'
miRNA:   3'- -CCGUGUCGGGuGuCG------UCGaa-GGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.