miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12367 5' -53.8 NC_003324.1 + 11585 0.66 0.807218
Target:  5'- cUCCCGcggcuccugccggagACugguGCGACGGCAGCg----- -3'
miRNA:   3'- cAGGGU---------------UGu---CGCUGCCGUCGauaagc -5'
12367 5' -53.8 NC_003324.1 + 41120 0.66 0.803355
Target:  5'- gGUCCCucCuGgGAgCGGUAGCUGUUgCGu -3'
miRNA:   3'- -CAGGGuuGuCgCU-GCCGUCGAUAA-GC- -5'
12367 5' -53.8 NC_003324.1 + 30565 0.66 0.793569
Target:  5'- uUUCCGAgGGCcugcuCGGCGGCgccgAUUCGa -3'
miRNA:   3'- cAGGGUUgUCGcu---GCCGUCGa---UAAGC- -5'
12367 5' -53.8 NC_003324.1 + 13163 0.66 0.793569
Target:  5'- --gUCGGCGGCGGuCGGCGGCgg--CGg -3'
miRNA:   3'- cagGGUUGUCGCU-GCCGUCGauaaGC- -5'
12367 5' -53.8 NC_003324.1 + 44573 0.66 0.783611
Target:  5'- -cCCCGuucgGCAGCGAcaCGGCGGCg----- -3'
miRNA:   3'- caGGGU----UGUCGCU--GCCGUCGauaagc -5'
12367 5' -53.8 NC_003324.1 + 45449 0.66 0.783611
Target:  5'- uUUUCGACAcUGGCGGCAGgUAUUCc -3'
miRNA:   3'- cAGGGUUGUcGCUGCCGUCgAUAAGc -5'
12367 5' -53.8 NC_003324.1 + 6143 0.66 0.773491
Target:  5'- aUCUCGAcCAGCGAUGGCAggauGCUGg--- -3'
miRNA:   3'- cAGGGUU-GUCGCUGCCGU----CGAUaagc -5'
12367 5' -53.8 NC_003324.1 + 55023 0.66 0.763222
Target:  5'- --aCCAGguGCugGAUGaGCAGCUGUUCa -3'
miRNA:   3'- cagGGUUguCG--CUGC-CGUCGAUAAGc -5'
12367 5' -53.8 NC_003324.1 + 15003 0.66 0.760113
Target:  5'- cUUCCAGCgcgagacgggcaaaGGCGACGGCAGg---UCGa -3'
miRNA:   3'- cAGGGUUG--------------UCGCUGCCGUCgauaAGC- -5'
12367 5' -53.8 NC_003324.1 + 30818 0.67 0.752814
Target:  5'- -gCCCAACGGuCGAUGGCGucggacGCU--UCGa -3'
miRNA:   3'- caGGGUUGUC-GCUGCCGU------CGAuaAGC- -5'
12367 5' -53.8 NC_003324.1 + 14597 0.67 0.752814
Target:  5'- --gCCGGCGGCGcagGCGGUAGCguggCGg -3'
miRNA:   3'- cagGGUUGUCGC---UGCCGUCGauaaGC- -5'
12367 5' -53.8 NC_003324.1 + 1073 0.67 0.74228
Target:  5'- aGUCCUGGCGGCuGCGGUAccGCU--UCGa -3'
miRNA:   3'- -CAGGGUUGUCGcUGCCGU--CGAuaAGC- -5'
12367 5' -53.8 NC_003324.1 + 33979 0.67 0.74228
Target:  5'- -gCCCGACGGaaaGGCGG-AGCccgAUUCGg -3'
miRNA:   3'- caGGGUUGUCg--CUGCCgUCGa--UAAGC- -5'
12367 5' -53.8 NC_003324.1 + 29724 0.68 0.688134
Target:  5'- aUCCCGGCucaGGCGGCGGCguugCGc -3'
miRNA:   3'- cAGGGUUGucgCUGCCGUCGauaaGC- -5'
12367 5' -53.8 NC_003324.1 + 49425 0.68 0.688134
Target:  5'- -gCCCGGCAGCGGCGcuuGGCUGaUCu -3'
miRNA:   3'- caGGGUUGUCGCUGCcg-UCGAUaAGc -5'
12367 5' -53.8 NC_003324.1 + 35201 0.68 0.64375
Target:  5'- --gUCAACGGCGACGGC-GCUGgcgaCGa -3'
miRNA:   3'- cagGGUUGUCGCUGCCGuCGAUaa--GC- -5'
12367 5' -53.8 NC_003324.1 + 18474 0.69 0.6326
Target:  5'- -aCCCAAUcGUGACGGCuugcgAGCUcgUUGg -3'
miRNA:   3'- caGGGUUGuCGCUGCCG-----UCGAuaAGC- -5'
12367 5' -53.8 NC_003324.1 + 31270 0.69 0.610308
Target:  5'- uUUgCGGCGGCGACGGCuucUUGUUCGc -3'
miRNA:   3'- cAGgGUUGUCGCUGCCGuc-GAUAAGC- -5'
12367 5' -53.8 NC_003324.1 + 50780 0.69 0.610308
Target:  5'- uUCgUCGACGGCGACGGCAauGCUGc--- -3'
miRNA:   3'- cAG-GGUUGUCGCUGCCGU--CGAUaagc -5'
12367 5' -53.8 NC_003324.1 + 29961 0.7 0.566031
Target:  5'- cGUCCUgcgUAGCGGCGGCAGCcggGUccgcaUCGa -3'
miRNA:   3'- -CAGGGuu-GUCGCUGCCGUCGa--UA-----AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.