Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12367 | 5' | -53.8 | NC_003324.1 | + | 55023 | 0.66 | 0.763222 |
Target: 5'- --aCCAGguGCugGAUGaGCAGCUGUUCa -3' miRNA: 3'- cagGGUUguCG--CUGC-CGUCGAUAAGc -5' |
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12367 | 5' | -53.8 | NC_003324.1 | + | 6143 | 0.66 | 0.773491 |
Target: 5'- aUCUCGAcCAGCGAUGGCAggauGCUGg--- -3' miRNA: 3'- cAGGGUU-GUCGCUGCCGU----CGAUaagc -5' |
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12367 | 5' | -53.8 | NC_003324.1 | + | 30565 | 0.66 | 0.793569 |
Target: 5'- uUUCCGAgGGCcugcuCGGCGGCgccgAUUCGa -3' miRNA: 3'- cAGGGUUgUCGcu---GCCGUCGa---UAAGC- -5' |
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12367 | 5' | -53.8 | NC_003324.1 | + | 13163 | 0.66 | 0.793569 |
Target: 5'- --gUCGGCGGCGGuCGGCGGCgg--CGg -3' miRNA: 3'- cagGGUUGUCGCU-GCCGUCGauaaGC- -5' |
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12367 | 5' | -53.8 | NC_003324.1 | + | 31552 | 1.1 | 0.001232 |
Target: 5'- cGUCCCAACAGCGACGGCAGCUAUUCGa -3' miRNA: 3'- -CAGGGUUGUCGCUGCCGUCGAUAAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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