Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12367 | 5' | -53.8 | NC_003324.1 | + | 44573 | 0.66 | 0.783611 |
Target: 5'- -cCCCGuucgGCAGCGAcaCGGCGGCg----- -3' miRNA: 3'- caGGGU----UGUCGCU--GCCGUCGauaagc -5' |
|||||||
12367 | 5' | -53.8 | NC_003324.1 | + | 13163 | 0.66 | 0.793569 |
Target: 5'- --gUCGGCGGCGGuCGGCGGCgg--CGg -3' miRNA: 3'- cagGGUUGUCGCU-GCCGUCGauaaGC- -5' |
|||||||
12367 | 5' | -53.8 | NC_003324.1 | + | 30565 | 0.66 | 0.793569 |
Target: 5'- uUUCCGAgGGCcugcuCGGCGGCgccgAUUCGa -3' miRNA: 3'- cAGGGUUgUCGcu---GCCGUCGa---UAAGC- -5' |
|||||||
12367 | 5' | -53.8 | NC_003324.1 | + | 41120 | 0.66 | 0.803355 |
Target: 5'- gGUCCCucCuGgGAgCGGUAGCUGUUgCGu -3' miRNA: 3'- -CAGGGuuGuCgCU-GCCGUCGAUAA-GC- -5' |
|||||||
12367 | 5' | -53.8 | NC_003324.1 | + | 11585 | 0.66 | 0.807218 |
Target: 5'- cUCCCGcggcuccugccggagACugguGCGACGGCAGCg----- -3' miRNA: 3'- cAGGGU---------------UGu---CGCUGCCGUCGauaagc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home