miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12368 5' -54.6 NC_003324.1 + 12815 0.68 0.671179
Target:  5'- --uCCAGCGUUUCGacgcgCCGcaagGGGCUc -3'
miRNA:   3'- gauGGUCGCAAAGCg----GGCuaa-CCCGG- -5'
12368 5' -54.6 NC_003324.1 + 14727 0.73 0.347844
Target:  5'- gUACUGGCuGUUggUCGCCUGAUUgccggaaaGGGCCg -3'
miRNA:   3'- gAUGGUCG-CAA--AGCGGGCUAA--------CCCGG- -5'
12368 5' -54.6 NC_003324.1 + 17246 0.69 0.572568
Target:  5'- -cGCCAGCGccUCGUCaaucgcUGGGCCa -3'
miRNA:   3'- gaUGGUCGCaaAGCGGgcua--ACCCGG- -5'
12368 5' -54.6 NC_003324.1 + 28168 0.68 0.647065
Target:  5'- uUGCCGGCuuccuucugUGCCUGAgUGGGCUc -3'
miRNA:   3'- gAUGGUCGcaaa-----GCGGGCUaACCCGG- -5'
12368 5' -54.6 NC_003324.1 + 30039 0.69 0.60203
Target:  5'- gCUGCCGccgcuacgcaggacGCcccUCGCCCGuccggaccGUUGGGCCg -3'
miRNA:   3'- -GAUGGU--------------CGcaaAGCGGGC--------UAACCCGG- -5'
12368 5' -54.6 NC_003324.1 + 30400 0.66 0.746152
Target:  5'- -gACCAGgauaCGgacggCuUCCGAUUGGGCCa -3'
miRNA:   3'- gaUGGUC----GCaaa--GcGGGCUAACCCGG- -5'
12368 5' -54.6 NC_003324.1 + 30986 0.74 0.315668
Target:  5'- --uCCGGCGUg--GUCgGAUUGGGCCa -3'
miRNA:   3'- gauGGUCGCAaagCGGgCUAACCCGG- -5'
12368 5' -54.6 NC_003324.1 + 31679 0.68 0.660233
Target:  5'- -cGCCAGcCGUUauggucugUCuuuCCCGA-UGGGCCa -3'
miRNA:   3'- gaUGGUC-GCAA--------AGc--GGGCUaACCCGG- -5'
12368 5' -54.6 NC_003324.1 + 32299 1.12 0.000829
Target:  5'- gCUACCAGCGUUUCGCCCGAUUGGGCCu -3'
miRNA:   3'- -GAUGGUCGCAAAGCGGGCUAACCCGG- -5'
12368 5' -54.6 NC_003324.1 + 32344 0.66 0.786709
Target:  5'- cCUGCCuAGCGgcaUCGCCCGGcuuccUGuaGCCg -3'
miRNA:   3'- -GAUGG-UCGCaa-AGCGGGCUa----ACc-CGG- -5'
12368 5' -54.6 NC_003324.1 + 34495 0.66 0.766707
Target:  5'- -gGCCGGCGUcUUGUUCGuc-GGGUCc -3'
miRNA:   3'- gaUGGUCGCAaAGCGGGCuaaCCCGG- -5'
12368 5' -54.6 NC_003324.1 + 40571 0.67 0.725137
Target:  5'- aCUACCGuGuCGUcaugUCGCCCGAUgugguUGuGGUCc -3'
miRNA:   3'- -GAUGGU-C-GCAa---AGCGGGCUA-----AC-CCGG- -5'
12368 5' -54.6 NC_003324.1 + 40964 0.69 0.594367
Target:  5'- --uCCAGCG-UUCGUugaagUCGAUcGGGCCg -3'
miRNA:   3'- gauGGUCGCaAAGCG-----GGCUAaCCCGG- -5'
12368 5' -54.6 NC_003324.1 + 48260 0.7 0.529613
Target:  5'- -aACCAGCGaacgCGgCCGAUaGGGaCCa -3'
miRNA:   3'- gaUGGUCGCaaa-GCgGGCUAaCCC-GG- -5'
12368 5' -54.6 NC_003324.1 + 48617 0.75 0.300442
Target:  5'- uCU-CCuucuGgGUUUCGCCCgGAUUGGGCUu -3'
miRNA:   3'- -GAuGGu---CgCAAAGCGGG-CUAACCCGG- -5'
12368 5' -54.6 NC_003324.1 + 49108 0.7 0.508575
Target:  5'- gCUGCCGGUGacgcgaUCGCCaaGAUggcGGGCCg -3'
miRNA:   3'- -GAUGGUCGCaa----AGCGGg-CUAa--CCCGG- -5'
12368 5' -54.6 NC_003324.1 + 50586 0.67 0.714485
Target:  5'- gUGCCAGCGcugUUUCaaaaGCUgGGUgaucugguugUGGGCCa -3'
miRNA:   3'- gAUGGUCGC---AAAG----CGGgCUA----------ACCCGG- -5'
12368 5' -54.6 NC_003324.1 + 51130 0.66 0.786709
Target:  5'- uCUGCCucGUGgagUUCcaaCCCGAacucuucgucUUGGGCCa -3'
miRNA:   3'- -GAUGGu-CGCa--AAGc--GGGCU----------AACCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.