miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12369 5' -62.4 NC_003324.1 + 25651 0.79 0.051329
Target:  5'- cCGCCGAGGacaaucUCGGCGAAGGCGGCc -3'
miRNA:   3'- -GCGGCUCCgac---GGCCGCUUCCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 26292 0.67 0.340795
Target:  5'- uGCU---GCUGCCGaGCGAGGG-GACGa -3'
miRNA:   3'- gCGGcucCGACGGC-CGCUUCCgCUGC- -5'
12369 5' -62.4 NC_003324.1 + 26636 0.72 0.143255
Target:  5'- -cUCGAuauGGUaGCCGGCGAGGGUGACa -3'
miRNA:   3'- gcGGCU---CCGaCGGCCGCUUCCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 27818 0.66 0.386368
Target:  5'- gCGCCGAGccccuuccaGCcGCUGGUGuaguugucgagguAGGCGGCGc -3'
miRNA:   3'- -GCGGCUC---------CGaCGGCCGCu------------UCCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 29473 0.7 0.226983
Target:  5'- gGCCGccuGGCUGCgGGCGcgucGGGCG-Ca -3'
miRNA:   3'- gCGGCu--CCGACGgCCGCu---UCCGCuGc -5'
12369 5' -62.4 NC_003324.1 + 30161 0.68 0.266834
Target:  5'- gCGUCGAGGaaGCCGcagcggccggugucGCGAccggcggcgugauGGGCGGCGg -3'
miRNA:   3'- -GCGGCUCCgaCGGC--------------CGCU-------------UCCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 30326 0.7 0.195241
Target:  5'- uCGCCGAuGG-UGUCGGCGguGGCGuCGc -3'
miRNA:   3'- -GCGGCU-CCgACGGCCGCuuCCGCuGC- -5'
12369 5' -62.4 NC_003324.1 + 30380 0.66 0.381296
Target:  5'- gCGUCGcuacAGGCaUGuUCGGCGGcuuGGGCGACc -3'
miRNA:   3'- -GCGGC----UCCG-AC-GGCCGCU---UCCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 30460 0.73 0.139548
Target:  5'- gGUCGAgGGCgGCaUGGcCGAGGGCGACGc -3'
miRNA:   3'- gCGGCU-CCGaCG-GCC-GCUUCCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 31314 0.72 0.154925
Target:  5'- gGCCGGcGGCgcuggcGCUGGCGggGGCaucgucaucGACGa -3'
miRNA:   3'- gCGGCU-CCGa-----CGGCCGCuuCCG---------CUGC- -5'
12369 5' -62.4 NC_003324.1 + 32220 0.66 0.398372
Target:  5'- aGcCCGGGGCgGcCCGGCccGAGGCGGa- -3'
miRNA:   3'- gC-GGCUCCGaC-GGCCGc-UUCCGCUgc -5'
12369 5' -62.4 NC_003324.1 + 32555 1.08 0.000279
Target:  5'- uCGCCGAGGCUGCCGGCGAAGGCGACGa -3'
miRNA:   3'- -GCGGCUCCGACGGCCGCUUCCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 34900 0.66 0.398372
Target:  5'- aCGgCGA-GCUGCaGGCGAAGGaGAUGc -3'
miRNA:   3'- -GCgGCUcCGACGgCCGCUUCCgCUGC- -5'
12369 5' -62.4 NC_003324.1 + 35209 0.73 0.125581
Target:  5'- gCGCUGAGGUcaacgGCgaCGGCGcuGGCGACGa -3'
miRNA:   3'- -GCGGCUCCGa----CG--GCCGCuuCCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 37468 0.69 0.244436
Target:  5'- aGCCGGGGUcuCCGG-GAuGGGCGACu -3'
miRNA:   3'- gCGGCUCCGacGGCCgCU-UCCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 39255 0.66 0.364716
Target:  5'- cCGCCGuGGCUGCgccaGAAGGUGcCGa -3'
miRNA:   3'- -GCGGCuCCGACGgccgCUUCCGCuGC- -5'
12369 5' -62.4 NC_003324.1 + 40003 0.66 0.356615
Target:  5'- uGgCGAGGgUGuuGGCGAucGUGAUGu -3'
miRNA:   3'- gCgGCUCCgACggCCGCUucCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 40613 0.69 0.25668
Target:  5'- uCGCUGGGGCcauccGCCGGaucAGGGCGAUc -3'
miRNA:   3'- -GCGGCUCCGa----CGGCCgc-UUCCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 41675 0.66 0.364716
Target:  5'- uCGCagaGGGGCUuucCCGaGCGAGGGaCGGCc -3'
miRNA:   3'- -GCGg--CUCCGAc--GGC-CGCUUCC-GCUGc -5'
12369 5' -62.4 NC_003324.1 + 42318 0.69 0.256056
Target:  5'- uGCCG-GGC-GCCGGUGAcagacuuAGaGCGACu -3'
miRNA:   3'- gCGGCuCCGaCGGCCGCU-------UC-CGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.