Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12369 | 5' | -62.4 | NC_003324.1 | + | 25651 | 0.79 | 0.051329 |
Target: 5'- cCGCCGAGGacaaucUCGGCGAAGGCGGCc -3' miRNA: 3'- -GCGGCUCCgac---GGCCGCUUCCGCUGc -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 26292 | 0.67 | 0.340795 |
Target: 5'- uGCU---GCUGCCGaGCGAGGG-GACGa -3' miRNA: 3'- gCGGcucCGACGGC-CGCUUCCgCUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 26636 | 0.72 | 0.143255 |
Target: 5'- -cUCGAuauGGUaGCCGGCGAGGGUGACa -3' miRNA: 3'- gcGGCU---CCGaCGGCCGCUUCCGCUGc -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 27818 | 0.66 | 0.386368 |
Target: 5'- gCGCCGAGccccuuccaGCcGCUGGUGuaguugucgagguAGGCGGCGc -3' miRNA: 3'- -GCGGCUC---------CGaCGGCCGCu------------UCCGCUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 29473 | 0.7 | 0.226983 |
Target: 5'- gGCCGccuGGCUGCgGGCGcgucGGGCG-Ca -3' miRNA: 3'- gCGGCu--CCGACGgCCGCu---UCCGCuGc -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 30161 | 0.68 | 0.266834 |
Target: 5'- gCGUCGAGGaaGCCGcagcggccggugucGCGAccggcggcgugauGGGCGGCGg -3' miRNA: 3'- -GCGGCUCCgaCGGC--------------CGCU-------------UCCGCUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 30326 | 0.7 | 0.195241 |
Target: 5'- uCGCCGAuGG-UGUCGGCGguGGCGuCGc -3' miRNA: 3'- -GCGGCU-CCgACGGCCGCuuCCGCuGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 30380 | 0.66 | 0.381296 |
Target: 5'- gCGUCGcuacAGGCaUGuUCGGCGGcuuGGGCGACc -3' miRNA: 3'- -GCGGC----UCCG-AC-GGCCGCU---UCCGCUGc -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 30460 | 0.73 | 0.139548 |
Target: 5'- gGUCGAgGGCgGCaUGGcCGAGGGCGACGc -3' miRNA: 3'- gCGGCU-CCGaCG-GCC-GCUUCCGCUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 31314 | 0.72 | 0.154925 |
Target: 5'- gGCCGGcGGCgcuggcGCUGGCGggGGCaucgucaucGACGa -3' miRNA: 3'- gCGGCU-CCGa-----CGGCCGCuuCCG---------CUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 32220 | 0.66 | 0.398372 |
Target: 5'- aGcCCGGGGCgGcCCGGCccGAGGCGGa- -3' miRNA: 3'- gC-GGCUCCGaC-GGCCGc-UUCCGCUgc -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 32555 | 1.08 | 0.000279 |
Target: 5'- uCGCCGAGGCUGCCGGCGAAGGCGACGa -3' miRNA: 3'- -GCGGCUCCGACGGCCGCUUCCGCUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 34900 | 0.66 | 0.398372 |
Target: 5'- aCGgCGA-GCUGCaGGCGAAGGaGAUGc -3' miRNA: 3'- -GCgGCUcCGACGgCCGCUUCCgCUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 35209 | 0.73 | 0.125581 |
Target: 5'- gCGCUGAGGUcaacgGCgaCGGCGcuGGCGACGa -3' miRNA: 3'- -GCGGCUCCGa----CG--GCCGCuuCCGCUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 37468 | 0.69 | 0.244436 |
Target: 5'- aGCCGGGGUcuCCGG-GAuGGGCGACu -3' miRNA: 3'- gCGGCUCCGacGGCCgCU-UCCGCUGc -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 39255 | 0.66 | 0.364716 |
Target: 5'- cCGCCGuGGCUGCgccaGAAGGUGcCGa -3' miRNA: 3'- -GCGGCuCCGACGgccgCUUCCGCuGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 40003 | 0.66 | 0.356615 |
Target: 5'- uGgCGAGGgUGuuGGCGAucGUGAUGu -3' miRNA: 3'- gCgGCUCCgACggCCGCUucCGCUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 40613 | 0.69 | 0.25668 |
Target: 5'- uCGCUGGGGCcauccGCCGGaucAGGGCGAUc -3' miRNA: 3'- -GCGGCUCCGa----CGGCCgc-UUCCGCUGc -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 41675 | 0.66 | 0.364716 |
Target: 5'- uCGCagaGGGGCUuucCCGaGCGAGGGaCGGCc -3' miRNA: 3'- -GCGg--CUCCGAc--GGC-CGCUUCC-GCUGc -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 42318 | 0.69 | 0.256056 |
Target: 5'- uGCCG-GGC-GCCGGUGAcagacuuAGaGCGACu -3' miRNA: 3'- gCGGCuCCGaCGGCCGCU-------UC-CGCUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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