miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12369 5' -62.4 NC_003324.1 + 2518 0.66 0.389773
Target:  5'- gGUgGGGaacaaGCcGCCGGCGucGGCGGCu -3'
miRNA:   3'- gCGgCUC-----CGaCGGCCGCuuCCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 4704 0.67 0.31803
Target:  5'- aCGaCCaGGGCgGCUGGCuggaaauccaGAAGGCGGCu -3'
miRNA:   3'- -GC-GGcUCCGaCGGCCG----------CUUCCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 11574 0.66 0.407092
Target:  5'- aGCCGAugcugcucccgcGGCuccUGCCGGaGAcuGGuGCGACGg -3'
miRNA:   3'- gCGGCU------------CCG---ACGGCCgCU--UC-CGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 12518 0.66 0.356615
Target:  5'- aCGaCG-GGCUGgUGGCaguucGAGGCGACGg -3'
miRNA:   3'- -GCgGCuCCGACgGCCGc----UUCCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 12993 0.68 0.28267
Target:  5'- gCGCUGuucGCgGCUGGCGAucugcaGGGCGGCa -3'
miRNA:   3'- -GCGGCuc-CGaCGGCCGCU------UCCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 13179 0.75 0.098771
Target:  5'- cCGUcagCGAGGCUGCgucggCGGCGGucGGCGGCGg -3'
miRNA:   3'- -GCG---GCUCCGACG-----GCCGCUu-CCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 14573 0.7 0.200248
Target:  5'- gGUCGcGGcCUGCCGGCGcaagcggccGGCGGCGc -3'
miRNA:   3'- gCGGCuCC-GACGGCCGCuu-------CCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 15460 0.67 0.325489
Target:  5'- uGCCaGGGGCgagGCCaaGGcCGAGGauaGCGACGa -3'
miRNA:   3'- gCGG-CUCCGa--CGG--CC-GCUUC---CGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 17768 0.67 0.325489
Target:  5'- cCGCCaucaGGGCcaucaUGCCGGUGAugccGGCGAUc -3'
miRNA:   3'- -GCGGc---UCCG-----ACGGCCGCUu---CCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 18802 0.66 0.389773
Target:  5'- uGCgCG-GGUccaugGCgCGGCGAAGGuCGGCGc -3'
miRNA:   3'- gCG-GCuCCGa----CG-GCCGCUUCC-GCUGC- -5'
12369 5' -62.4 NC_003324.1 + 20251 0.67 0.340795
Target:  5'- uGaCCGAGGCUGCCGGCa---GCGu-- -3'
miRNA:   3'- gC-GGCUCCGACGGCCGcuucCGCugc -5'
12369 5' -62.4 NC_003324.1 + 20305 0.67 0.333077
Target:  5'- gGCUGcauuccaucuGGGCUGCCGGCcauaccGGGCG-CGu -3'
miRNA:   3'- gCGGC----------UCCGACGGCCGcu----UCCGCuGC- -5'
12369 5' -62.4 NC_003324.1 + 20422 0.67 0.31803
Target:  5'- uGUCGAaccGGCuucUGUCGGCGAuGGCGAa- -3'
miRNA:   3'- gCGGCU---CCG---ACGGCCGCUuCCGCUgc -5'
12369 5' -62.4 NC_003324.1 + 20786 0.66 0.407092
Target:  5'- cCGCCGGaac-GuuGGCG-AGGCGGCGg -3'
miRNA:   3'- -GCGGCUccgaCggCCGCuUCCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 21208 0.7 0.195241
Target:  5'- cCGCCu-GGCUuucgaGCUGcCGAAGGCGACGg -3'
miRNA:   3'- -GCGGcuCCGA-----CGGCcGCUUCCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 21388 0.73 0.125581
Target:  5'- -aUCGAGGauaucGCCGGCG-AGGCGGCGa -3'
miRNA:   3'- gcGGCUCCga---CGGCCGCuUCCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 21929 0.69 0.23674
Target:  5'- cCGCCGAggaggcccGGCUGCgCgaacugaugcagaaGGCGGAcgacGGCGACGa -3'
miRNA:   3'- -GCGGCU--------CCGACG-G--------------CCGCUU----CCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 24279 0.67 0.333077
Target:  5'- uCGUCGAucugggcacGGCggaGCuUGGCGAAGGCGucGCGg -3'
miRNA:   3'- -GCGGCU---------CCGa--CG-GCCGCUUCCGC--UGC- -5'
12369 5' -62.4 NC_003324.1 + 24997 0.7 0.215943
Target:  5'- gCGaCCGGgcGGCgUGCUGGCGAugguGGUGACa -3'
miRNA:   3'- -GC-GGCU--CCG-ACGGCCGCUu---CCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 25112 0.66 0.381296
Target:  5'- gCGCCGGGGUagagGUucuUGGCGAugccgccGGUGACGc -3'
miRNA:   3'- -GCGGCUCCGa---CG---GCCGCUu------CCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.