miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12369 5' -62.4 NC_003324.1 + 51001 0.67 0.340795
Target:  5'- uCGaCGAGGCU--CGGaCGAAGGcCGACGa -3'
miRNA:   3'- -GCgGCUCCGAcgGCC-GCUUCC-GCUGC- -5'
12369 5' -62.4 NC_003324.1 + 52104 0.68 0.276646
Target:  5'- aCGCCGAcGauuauuuugacgagGUCGGCGAAGGCGAg- -3'
miRNA:   3'- -GCGGCUcCga------------CGGCCGCUUCCGCUgc -5'
12369 5' -62.4 NC_003324.1 + 12993 0.68 0.28267
Target:  5'- gCGCUGuucGCgGCUGGCGAucugcaGGGCGGCa -3'
miRNA:   3'- -GCGGCuc-CGaCGGCCGCU------UCCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 51396 0.67 0.317291
Target:  5'- uGgCGAGGUU-CCGGUGAAGaucagccGCGGCGa -3'
miRNA:   3'- gCgGCUCCGAcGGCCGCUUC-------CGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 4704 0.67 0.31803
Target:  5'- aCGaCCaGGGCgGCUGGCuggaaauccaGAAGGCGGCu -3'
miRNA:   3'- -GC-GGcUCCGaCGGCCG----------CUUCCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 15460 0.67 0.325489
Target:  5'- uGCCaGGGGCgagGCCaaGGcCGAGGauaGCGACGa -3'
miRNA:   3'- gCGG-CUCCGa--CGG--CC-GCUUC---CGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 17768 0.67 0.325489
Target:  5'- cCGCCaucaGGGCcaucaUGCCGGUGAugccGGCGAUc -3'
miRNA:   3'- -GCGGc---UCCG-----ACGGCCGCUu---CCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 55052 0.67 0.333077
Target:  5'- gGCUG-GGCUGCC-GCGAcGGCG-Ca -3'
miRNA:   3'- gCGGCuCCGACGGcCGCUuCCGCuGc -5'
12369 5' -62.4 NC_003324.1 + 24279 0.67 0.333077
Target:  5'- uCGUCGAucugggcacGGCggaGCuUGGCGAAGGCGucGCGg -3'
miRNA:   3'- -GCGGCU---------CCGa--CG-GCCGCUUCCGC--UGC- -5'
12369 5' -62.4 NC_003324.1 + 56060 0.68 0.275982
Target:  5'- gGCCGucGGCUuccagGCUGGCGAAcccGCGAUGg -3'
miRNA:   3'- gCGGCu-CCGA-----CGGCCGCUUc--CGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 40613 0.69 0.25668
Target:  5'- uCGCUGGGGCcauccGCCGGaucAGGGCGAUc -3'
miRNA:   3'- -GCGGCUCCGa----CGGCCgc-UUCCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 42318 0.69 0.256056
Target:  5'- uGCCG-GGC-GCCGGUGAcagacuuAGaGCGACu -3'
miRNA:   3'- gCGGCuCCGaCGGCCGCU-------UC-CGCUGc -5'
12369 5' -62.4 NC_003324.1 + 53491 0.72 0.144764
Target:  5'- aGCCGAGGCcgaaUGCCGGCGAugcccugaugagcuGGaGAUGg -3'
miRNA:   3'- gCGGCUCCG----ACGGCCGCUu-------------CCgCUGC- -5'
12369 5' -62.4 NC_003324.1 + 21208 0.7 0.195241
Target:  5'- cCGCCu-GGCUuucgaGCUGcCGAAGGCGACGg -3'
miRNA:   3'- -GCGGcuCCGA-----CGGCcGCUUCCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 14573 0.7 0.200248
Target:  5'- gGUCGcGGcCUGCCGGCGcaagcggccGGCGGCGc -3'
miRNA:   3'- gCGGCuCC-GACGGCCGCuu-------CCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 42863 0.7 0.205366
Target:  5'- -uUCGAGGCUGCCGGCcggcccgcGAGGaucuGCGACc -3'
miRNA:   3'- gcGGCUCCGACGGCCG--------CUUC----CGCUGc -5'
12369 5' -62.4 NC_003324.1 + 52292 0.7 0.221405
Target:  5'- cCGCCcgauucGGGGCgGCCGGCGucuGCGACc -3'
miRNA:   3'- -GCGG------CUCCGaCGGCCGCuucCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 49482 0.7 0.22642
Target:  5'- uGCCaAGG-UGCCGGUccgcaacGAGGGCGGCa -3'
miRNA:   3'- gCGGcUCCgACGGCCG-------CUUCCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 29473 0.7 0.226983
Target:  5'- gGCCGccuGGCUGCgGGCGcgucGGGCG-Ca -3'
miRNA:   3'- gCGGCu--CCGACGgCCGCu---UCCGCuGc -5'
12369 5' -62.4 NC_003324.1 + 37468 0.69 0.244436
Target:  5'- aGCCGGGGUcuCCGG-GAuGGGCGACu -3'
miRNA:   3'- gCGGCUCCGacGGCCgCU-UCCGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.