Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
12369 | 5' | -62.4 | NC_003324.1 | + | 44435 | 0.66 | 0.407092 |
Target: 5'- gCGCCGAGacuucggucGCUgaugGCCGGCGuuugaaacGGCGAUu -3' miRNA: 3'- -GCGGCUC---------CGA----CGGCCGCuu------CCGCUGc -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 41675 | 0.66 | 0.364716 |
Target: 5'- uCGCagaGGGGCUuucCCGaGCGAGGGaCGGCc -3' miRNA: 3'- -GCGg--CUCCGAc--GGC-CGCUUCC-GCUGc -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 39255 | 0.66 | 0.364716 |
Target: 5'- cCGCCGuGGCUGCgccaGAAGGUGcCGa -3' miRNA: 3'- -GCGGCuCCGACGgccgCUUCCGCuGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 30380 | 0.66 | 0.381296 |
Target: 5'- gCGUCGcuacAGGCaUGuUCGGCGGcuuGGGCGACc -3' miRNA: 3'- -GCGGC----UCCG-AC-GGCCGCU---UCCGCUGc -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 43334 | 0.66 | 0.381296 |
Target: 5'- uGCC---GCUGCCaGGCGAcccugcAGGCGGCc -3' miRNA: 3'- gCGGcucCGACGG-CCGCU------UCCGCUGc -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 2518 | 0.66 | 0.389773 |
Target: 5'- gGUgGGGaacaaGCcGCCGGCGucGGCGGCu -3' miRNA: 3'- gCGgCUC-----CGaCGGCCGCuuCCGCUGc -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 34900 | 0.66 | 0.398372 |
Target: 5'- aCGgCGA-GCUGCaGGCGAAGGaGAUGc -3' miRNA: 3'- -GCgGCUcCGACGgCCGCUUCCgCUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 32220 | 0.66 | 0.398372 |
Target: 5'- aGcCCGGGGCgGcCCGGCccGAGGCGGa- -3' miRNA: 3'- gC-GGCUCCGaC-GGCCGc-UUCCGCUgc -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 20786 | 0.66 | 0.407092 |
Target: 5'- cCGCCGGaac-GuuGGCG-AGGCGGCGg -3' miRNA: 3'- -GCGGCUccgaCggCCGCuUCCGCUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 53675 | 0.66 | 0.407092 |
Target: 5'- gCGCCGAGcUUGauaCGGCGAaacAGGCGcUGg -3' miRNA: 3'- -GCGGCUCcGACg--GCCGCU---UCCGCuGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 40003 | 0.66 | 0.356615 |
Target: 5'- uGgCGAGGgUGuuGGCGAucGUGAUGu -3' miRNA: 3'- gCgGCUCCgACggCCGCUucCGCUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 11574 | 0.66 | 0.407092 |
Target: 5'- aGCCGAugcugcucccgcGGCuccUGCCGGaGAcuGGuGCGACGg -3' miRNA: 3'- gCGGCU------------CCG---ACGGCCgCU--UC-CGCUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 18802 | 0.66 | 0.389773 |
Target: 5'- uGCgCG-GGUccaugGCgCGGCGAAGGuCGGCGc -3' miRNA: 3'- gCG-GCuCCGa----CG-GCCGCUUCC-GCUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 45694 | 0.66 | 0.364716 |
Target: 5'- uCGgCGAGGCgugaGCagGGCaaucAGGCGACGg -3' miRNA: 3'- -GCgGCUCCGa---CGg-CCGcu--UCCGCUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 54215 | 0.66 | 0.381296 |
Target: 5'- aGCgCGAcauagagcGGCUGCUcaaaGCGAAGGCG-CGg -3' miRNA: 3'- gCG-GCU--------CCGACGGc---CGCUUCCGCuGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 43797 | 0.66 | 0.389773 |
Target: 5'- uGCCG-GGaacGCCGGC-AAGGCG-CGu -3' miRNA: 3'- gCGGCuCCga-CGGCCGcUUCCGCuGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 25112 | 0.66 | 0.381296 |
Target: 5'- gCGCCGGGGUagagGUucuUGGCGAugccgccGGUGACGc -3' miRNA: 3'- -GCGGCUCCGa---CG---GCCGCUu------CCGCUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 48805 | 0.66 | 0.372944 |
Target: 5'- aGCCGgaAGG-UGCCaccgaGGCcaauGggGGCGACGa -3' miRNA: 3'- gCGGC--UCCgACGG-----CCG----CuuCCGCUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 27818 | 0.66 | 0.386368 |
Target: 5'- gCGCCGAGccccuuccaGCcGCUGGUGuaguugucgagguAGGCGGCGc -3' miRNA: 3'- -GCGGCUC---------CGaCGGCCGCu------------UCCGCUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 12518 | 0.66 | 0.356615 |
Target: 5'- aCGaCG-GGCUGgUGGCaguucGAGGCGACGg -3' miRNA: 3'- -GCgGCuCCGACgGCCGc----UUCCGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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