miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12369 5' -62.4 NC_003324.1 + 44435 0.66 0.407092
Target:  5'- gCGCCGAGacuucggucGCUgaugGCCGGCGuuugaaacGGCGAUu -3'
miRNA:   3'- -GCGGCUC---------CGA----CGGCCGCuu------CCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 41675 0.66 0.364716
Target:  5'- uCGCagaGGGGCUuucCCGaGCGAGGGaCGGCc -3'
miRNA:   3'- -GCGg--CUCCGAc--GGC-CGCUUCC-GCUGc -5'
12369 5' -62.4 NC_003324.1 + 39255 0.66 0.364716
Target:  5'- cCGCCGuGGCUGCgccaGAAGGUGcCGa -3'
miRNA:   3'- -GCGGCuCCGACGgccgCUUCCGCuGC- -5'
12369 5' -62.4 NC_003324.1 + 30380 0.66 0.381296
Target:  5'- gCGUCGcuacAGGCaUGuUCGGCGGcuuGGGCGACc -3'
miRNA:   3'- -GCGGC----UCCG-AC-GGCCGCU---UCCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 43334 0.66 0.381296
Target:  5'- uGCC---GCUGCCaGGCGAcccugcAGGCGGCc -3'
miRNA:   3'- gCGGcucCGACGG-CCGCU------UCCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 2518 0.66 0.389773
Target:  5'- gGUgGGGaacaaGCcGCCGGCGucGGCGGCu -3'
miRNA:   3'- gCGgCUC-----CGaCGGCCGCuuCCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 34900 0.66 0.398372
Target:  5'- aCGgCGA-GCUGCaGGCGAAGGaGAUGc -3'
miRNA:   3'- -GCgGCUcCGACGgCCGCUUCCgCUGC- -5'
12369 5' -62.4 NC_003324.1 + 32220 0.66 0.398372
Target:  5'- aGcCCGGGGCgGcCCGGCccGAGGCGGa- -3'
miRNA:   3'- gC-GGCUCCGaC-GGCCGc-UUCCGCUgc -5'
12369 5' -62.4 NC_003324.1 + 20786 0.66 0.407092
Target:  5'- cCGCCGGaac-GuuGGCG-AGGCGGCGg -3'
miRNA:   3'- -GCGGCUccgaCggCCGCuUCCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 53675 0.66 0.407092
Target:  5'- gCGCCGAGcUUGauaCGGCGAaacAGGCGcUGg -3'
miRNA:   3'- -GCGGCUCcGACg--GCCGCU---UCCGCuGC- -5'
12369 5' -62.4 NC_003324.1 + 40003 0.66 0.356615
Target:  5'- uGgCGAGGgUGuuGGCGAucGUGAUGu -3'
miRNA:   3'- gCgGCUCCgACggCCGCUucCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 11574 0.66 0.407092
Target:  5'- aGCCGAugcugcucccgcGGCuccUGCCGGaGAcuGGuGCGACGg -3'
miRNA:   3'- gCGGCU------------CCG---ACGGCCgCU--UC-CGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 18802 0.66 0.389773
Target:  5'- uGCgCG-GGUccaugGCgCGGCGAAGGuCGGCGc -3'
miRNA:   3'- gCG-GCuCCGa----CG-GCCGCUUCC-GCUGC- -5'
12369 5' -62.4 NC_003324.1 + 45694 0.66 0.364716
Target:  5'- uCGgCGAGGCgugaGCagGGCaaucAGGCGACGg -3'
miRNA:   3'- -GCgGCUCCGa---CGg-CCGcu--UCCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 54215 0.66 0.381296
Target:  5'- aGCgCGAcauagagcGGCUGCUcaaaGCGAAGGCG-CGg -3'
miRNA:   3'- gCG-GCU--------CCGACGGc---CGCUUCCGCuGC- -5'
12369 5' -62.4 NC_003324.1 + 43797 0.66 0.389773
Target:  5'- uGCCG-GGaacGCCGGC-AAGGCG-CGu -3'
miRNA:   3'- gCGGCuCCga-CGGCCGcUUCCGCuGC- -5'
12369 5' -62.4 NC_003324.1 + 25112 0.66 0.381296
Target:  5'- gCGCCGGGGUagagGUucuUGGCGAugccgccGGUGACGc -3'
miRNA:   3'- -GCGGCUCCGa---CG---GCCGCUu------CCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 48805 0.66 0.372944
Target:  5'- aGCCGgaAGG-UGCCaccgaGGCcaauGggGGCGACGa -3'
miRNA:   3'- gCGGC--UCCgACGG-----CCG----CuuCCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 27818 0.66 0.386368
Target:  5'- gCGCCGAGccccuuccaGCcGCUGGUGuaguugucgagguAGGCGGCGc -3'
miRNA:   3'- -GCGGCUC---------CGaCGGCCGCu------------UCCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 12518 0.66 0.356615
Target:  5'- aCGaCG-GGCUGgUGGCaguucGAGGCGACGg -3'
miRNA:   3'- -GCgGCuCCGACgGCCGc----UUCCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.