miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12369 5' -62.4 NC_003324.1 + 32220 0.66 0.398372
Target:  5'- aGcCCGGGGCgGcCCGGCccGAGGCGGa- -3'
miRNA:   3'- gC-GGCUCCGaC-GGCCGc-UUCCGCUgc -5'
12369 5' -62.4 NC_003324.1 + 30161 0.68 0.266834
Target:  5'- gCGUCGAGGaaGCCGcagcggccggugucGCGAccggcggcgugauGGGCGGCGg -3'
miRNA:   3'- -GCGGCUCCgaCGGC--------------CGCU-------------UCCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 21929 0.69 0.23674
Target:  5'- cCGCCGAggaggcccGGCUGCgCgaacugaugcagaaGGCGGAcgacGGCGACGa -3'
miRNA:   3'- -GCGGCU--------CCGACG-G--------------CCGCUU----CCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 32555 1.08 0.000279
Target:  5'- uCGCCGAGGCUGCCGGCGAAGGCGACGa -3'
miRNA:   3'- -GCGGCUCCGACGGCCGCUUCCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 30380 0.66 0.381296
Target:  5'- gCGUCGcuacAGGCaUGuUCGGCGGcuuGGGCGACc -3'
miRNA:   3'- -GCGGC----UCCG-AC-GGCCGCU---UCCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 39255 0.66 0.364716
Target:  5'- cCGCCGuGGCUGCgccaGAAGGUGcCGa -3'
miRNA:   3'- -GCGGCuCCGACGgccgCUUCCGCuGC- -5'
12369 5' -62.4 NC_003324.1 + 44407 0.66 0.364716
Target:  5'- gCGCCGuGGCUGCagaGGCuaucGGCcGCGc -3'
miRNA:   3'- -GCGGCuCCGACGg--CCGcuu-CCGcUGC- -5'
12369 5' -62.4 NC_003324.1 + 49316 0.66 0.3639
Target:  5'- cCGUCG-GGCUGCCcgaucauGGCGucgcAGGCGuuCGg -3'
miRNA:   3'- -GCGGCuCCGACGG-------CCGCu---UCCGCu-GC- -5'
12369 5' -62.4 NC_003324.1 + 26292 0.67 0.340795
Target:  5'- uGCU---GCUGCCGaGCGAGGG-GACGa -3'
miRNA:   3'- gCGGcucCGACGGC-CGCUUCCgCUGC- -5'
12369 5' -62.4 NC_003324.1 + 44766 0.68 0.269422
Target:  5'- aCGUCGAGGCUGCCaacaccacgaucGaCGAAGugcGCGACa -3'
miRNA:   3'- -GCGGCUCCGACGG------------CcGCUUC---CGCUGc -5'
12369 5' -62.4 NC_003324.1 + 20305 0.67 0.333077
Target:  5'- gGCUGcauuccaucuGGGCUGCCGGCcauaccGGGCG-CGu -3'
miRNA:   3'- gCGGC----------UCCGACGGCCGcu----UCCGCuGC- -5'
12369 5' -62.4 NC_003324.1 + 49114 0.67 0.348641
Target:  5'- cCGCCgcgggaGAGGUgagaagcaugGCC-GCGAGGGCGGCc -3'
miRNA:   3'- -GCGG------CUCCGa---------CGGcCGCUUCCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 34900 0.66 0.398372
Target:  5'- aCGgCGA-GCUGCaGGCGAAGGaGAUGc -3'
miRNA:   3'- -GCgGCUcCGACGgCCGCUUCCgCUGC- -5'
12369 5' -62.4 NC_003324.1 + 48977 0.67 0.325489
Target:  5'- gGCgGGuGGCggaguccuggaUGCgGGCGAAGGCG-CGa -3'
miRNA:   3'- gCGgCU-CCG-----------ACGgCCGCUUCCGCuGC- -5'
12369 5' -62.4 NC_003324.1 + 2518 0.66 0.389773
Target:  5'- gGUgGGGaacaaGCcGCCGGCGucGGCGGCu -3'
miRNA:   3'- gCGgCUC-----CGaCGGCCGCuuCCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 49256 0.66 0.356615
Target:  5'- aGCCGAucgaGGCUGUCgauGGUGccuucgguGGCGACGu -3'
miRNA:   3'- gCGGCU----CCGACGG---CCGCuu------CCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 20422 0.67 0.31803
Target:  5'- uGUCGAaccGGCuucUGUCGGCGAuGGCGAa- -3'
miRNA:   3'- gCGGCU---CCG---ACGGCCGCUuCCGCUgc -5'
12369 5' -62.4 NC_003324.1 + 42658 0.69 0.262989
Target:  5'- gGCCuacagcGAGGCUGCCGGCacGGucauuGCGGCa -3'
miRNA:   3'- gCGG------CUCCGACGGCCGcuUC-----CGCUGc -5'
12369 5' -62.4 NC_003324.1 + 43334 0.66 0.381296
Target:  5'- uGCC---GCUGCCaGGCGAcccugcAGGCGGCc -3'
miRNA:   3'- gCGGcucCGACGG-CCGCU------UCCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 41675 0.66 0.364716
Target:  5'- uCGCagaGGGGCUuucCCGaGCGAGGGaCGGCc -3'
miRNA:   3'- -GCGg--CUCCGAc--GGC-CGCUUCC-GCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.