miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12369 5' -62.4 NC_003324.1 + 49114 0.67 0.348641
Target:  5'- cCGCCgcgggaGAGGUgagaagcaugGCC-GCGAGGGCGGCc -3'
miRNA:   3'- -GCGG------CUCCGa---------CGGcCGCUUCCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 35209 0.73 0.125581
Target:  5'- gCGCUGAGGUcaacgGCgaCGGCGcuGGCGACGa -3'
miRNA:   3'- -GCGGCUCCGa----CG--GCCGCuuCCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 21929 0.69 0.23674
Target:  5'- cCGCCGAggaggcccGGCUGCgCgaacugaugcagaaGGCGGAcgacGGCGACGa -3'
miRNA:   3'- -GCGGCU--------CCGACG-G--------------CCGCUU----CCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 49256 0.66 0.356615
Target:  5'- aGCCGAucgaGGCUGUCgauGGUGccuucgguGGCGACGu -3'
miRNA:   3'- gCGGCU----CCGACGG---CCGCuu------CCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 57038 0.72 0.154925
Target:  5'- gGCUGGGGagcGgCGGCGAGGGCG-CGg -3'
miRNA:   3'- gCGGCUCCga-CgGCCGCUUCCGCuGC- -5'
12369 5' -62.4 NC_003324.1 + 13179 0.75 0.098771
Target:  5'- cCGUcagCGAGGCUGCgucggCGGCGGucGGCGGCGg -3'
miRNA:   3'- -GCG---GCUCCGACG-----GCCGCUu-CCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 21388 0.73 0.125581
Target:  5'- -aUCGAGGauaucGCCGGCG-AGGCGGCGa -3'
miRNA:   3'- gcGGCUCCga---CGGCCGCuUCCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 49316 0.66 0.3639
Target:  5'- cCGUCG-GGCUGCCcgaucauGGCGucgcAGGCGuuCGg -3'
miRNA:   3'- -GCGGCuCCGACGG-------CCGCu---UCCGCu-GC- -5'
12369 5' -62.4 NC_003324.1 + 44407 0.66 0.364716
Target:  5'- gCGCCGuGGCUGCagaGGCuaucGGCcGCGc -3'
miRNA:   3'- -GCGGCuCCGACGg--CCGcuu-CCGcUGC- -5'
12369 5' -62.4 NC_003324.1 + 26292 0.67 0.340795
Target:  5'- uGCU---GCUGCCGaGCGAGGG-GACGa -3'
miRNA:   3'- gCGGcucCGACGGC-CGCUUCCgCUGC- -5'
12369 5' -62.4 NC_003324.1 + 44766 0.68 0.269422
Target:  5'- aCGUCGAGGCUGCCaacaccacgaucGaCGAAGugcGCGACa -3'
miRNA:   3'- -GCGGCUCCGACGG------------CcGCUUC---CGCUGc -5'
12369 5' -62.4 NC_003324.1 + 49482 0.7 0.22642
Target:  5'- uGCCaAGG-UGCCGGUccgcaacGAGGGCGGCa -3'
miRNA:   3'- gCGGcUCCgACGGCCG-------CUUCCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 18802 0.66 0.389773
Target:  5'- uGCgCG-GGUccaugGCgCGGCGAAGGuCGGCGc -3'
miRNA:   3'- gCG-GCuCCGa----CG-GCCGCUUCC-GCUGC- -5'
12369 5' -62.4 NC_003324.1 + 43797 0.66 0.389773
Target:  5'- uGCCG-GGaacGCCGGC-AAGGCG-CGu -3'
miRNA:   3'- gCGGCuCCga-CGGCCGcUUCCGCuGC- -5'
12369 5' -62.4 NC_003324.1 + 27818 0.66 0.386368
Target:  5'- gCGCCGAGccccuuccaGCcGCUGGUGuaguugucgagguAGGCGGCGc -3'
miRNA:   3'- -GCGGCUC---------CGaCGGCCGCu------------UCCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 54215 0.66 0.381296
Target:  5'- aGCgCGAcauagagcGGCUGCUcaaaGCGAAGGCG-CGg -3'
miRNA:   3'- gCG-GCU--------CCGACGGc---CGCUUCCGCuGC- -5'
12369 5' -62.4 NC_003324.1 + 25112 0.66 0.381296
Target:  5'- gCGCCGGGGUagagGUucuUGGCGAugccgccGGUGACGc -3'
miRNA:   3'- -GCGGCUCCGa---CG---GCCGCUu------CCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 52104 0.68 0.276646
Target:  5'- aCGCCGAcGauuauuuugacgagGUCGGCGAAGGCGAg- -3'
miRNA:   3'- -GCGGCUcCga------------CGGCCGCUUCCGCUgc -5'
12369 5' -62.4 NC_003324.1 + 12993 0.68 0.28267
Target:  5'- gCGCUGuucGCgGCUGGCGAucugcaGGGCGGCa -3'
miRNA:   3'- -GCGGCuc-CGaCGGCCGCU------UCCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 51396 0.67 0.317291
Target:  5'- uGgCGAGGUU-CCGGUGAAGaucagccGCGGCGa -3'
miRNA:   3'- gCgGCUCCGAcGGCCGCUUC-------CGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.