miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12369 5' -62.4 NC_003324.1 + 21388 0.73 0.125581
Target:  5'- -aUCGAGGauaucGCCGGCG-AGGCGGCGa -3'
miRNA:   3'- gcGGCUCCga---CGGCCGCuUCCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 30460 0.73 0.139548
Target:  5'- gGUCGAgGGCgGCaUGGcCGAGGGCGACGc -3'
miRNA:   3'- gCGGCU-CCGaCG-GCC-GCUUCCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 57390 0.72 0.147053
Target:  5'- uGCUGgaGGGCUcgGCggaGGCGAGGGCGGCa -3'
miRNA:   3'- gCGGC--UCCGA--CGg--CCGCUUCCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 57038 0.72 0.154925
Target:  5'- gGCUGGGGagcGgCGGCGAGGGCG-CGg -3'
miRNA:   3'- gCGGCUCCga-CgGCCGCUUCCGCuGC- -5'
12369 5' -62.4 NC_003324.1 + 31314 0.72 0.154925
Target:  5'- gGCCGGcGGCgcuggcGCUGGCGggGGCaucgucaucGACGa -3'
miRNA:   3'- gCGGCU-CCGa-----CGGCCGCuuCCG---------CUGC- -5'
12369 5' -62.4 NC_003324.1 + 30326 0.7 0.195241
Target:  5'- uCGCCGAuGG-UGUCGGCGguGGCGuCGc -3'
miRNA:   3'- -GCGGCU-CCgACGGCCGCuuCCGCuGC- -5'
12369 5' -62.4 NC_003324.1 + 24997 0.7 0.215943
Target:  5'- gCGaCCGGgcGGCgUGCUGGCGAugguGGUGACa -3'
miRNA:   3'- -GC-GGCU--CCG-ACGGCCGCUu---CCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 21929 0.69 0.23674
Target:  5'- cCGCCGAggaggcccGGCUGCgCgaacugaugcagaaGGCGGAcgacGGCGACGa -3'
miRNA:   3'- -GCGGCU--------CCGACG-G--------------CCGCUU----CCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 42658 0.69 0.262989
Target:  5'- gGCCuacagcGAGGCUGCCGGCacGGucauuGCGGCa -3'
miRNA:   3'- gCGG------CUCCGACGGCCGcuUC-----CGCUGc -5'
12369 5' -62.4 NC_003324.1 + 30161 0.68 0.266834
Target:  5'- gCGUCGAGGaaGCCGcagcggccggugucGCGAccggcggcgugauGGGCGGCGg -3'
miRNA:   3'- -GCGGCUCCgaCGGC--------------CGCU-------------UCCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 20422 0.67 0.31803
Target:  5'- uGUCGAaccGGCuucUGUCGGCGAuGGCGAa- -3'
miRNA:   3'- gCGGCU---CCG---ACGGCCGCUuCCGCUgc -5'
12369 5' -62.4 NC_003324.1 + 53675 0.66 0.407092
Target:  5'- gCGCCGAGcUUGauaCGGCGAaacAGGCGcUGg -3'
miRNA:   3'- -GCGGCUCcGACg--GCCGCU---UCCGCuGC- -5'
12369 5' -62.4 NC_003324.1 + 20786 0.66 0.407092
Target:  5'- cCGCCGGaac-GuuGGCG-AGGCGGCGg -3'
miRNA:   3'- -GCGGCUccgaCggCCGCuUCCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 15460 0.67 0.325489
Target:  5'- uGCCaGGGGCgagGCCaaGGcCGAGGauaGCGACGa -3'
miRNA:   3'- gCGG-CUCCGa--CGG--CC-GCUUC---CGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 53491 0.72 0.144764
Target:  5'- aGCCGAGGCcgaaUGCCGGCGAugcccugaugagcuGGaGAUGg -3'
miRNA:   3'- gCGGCUCCG----ACGGCCGCUu-------------CCgCUGC- -5'
12369 5' -62.4 NC_003324.1 + 21208 0.7 0.195241
Target:  5'- cCGCCu-GGCUuucgaGCUGcCGAAGGCGACGg -3'
miRNA:   3'- -GCGGcuCCGA-----CGGCcGCUUCCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 14573 0.7 0.200248
Target:  5'- gGUCGcGGcCUGCCGGCGcaagcggccGGCGGCGc -3'
miRNA:   3'- gCGGCuCC-GACGGCCGCuu-------CCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 42863 0.7 0.205366
Target:  5'- -uUCGAGGCUGCCGGCcggcccgcGAGGaucuGCGACc -3'
miRNA:   3'- gcGGCUCCGACGGCCG--------CUUC----CGCUGc -5'
12369 5' -62.4 NC_003324.1 + 52292 0.7 0.221405
Target:  5'- cCGCCcgauucGGGGCgGCCGGCGucuGCGACc -3'
miRNA:   3'- -GCGG------CUCCGaCGGCCGCuucCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 49482 0.7 0.22642
Target:  5'- uGCCaAGG-UGCCGGUccgcaacGAGGGCGGCa -3'
miRNA:   3'- gCGGcUCCgACGGCCG-------CUUCCGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.