miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12369 5' -62.4 NC_003324.1 + 57390 0.72 0.147053
Target:  5'- uGCUGgaGGGCUcgGCggaGGCGAGGGCGGCa -3'
miRNA:   3'- gCGGC--UCCGA--CGg--CCGCUUCCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 57038 0.72 0.154925
Target:  5'- gGCUGGGGagcGgCGGCGAGGGCG-CGg -3'
miRNA:   3'- gCGGCUCCga-CgGCCGCUUCCGCuGC- -5'
12369 5' -62.4 NC_003324.1 + 56060 0.68 0.275982
Target:  5'- gGCCGucGGCUuccagGCUGGCGAAcccGCGAUGg -3'
miRNA:   3'- gCGGCu-CCGA-----CGGCCGCUUc--CGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 55052 0.67 0.333077
Target:  5'- gGCUG-GGCUGCC-GCGAcGGCG-Ca -3'
miRNA:   3'- gCGGCuCCGACGGcCGCUuCCGCuGc -5'
12369 5' -62.4 NC_003324.1 + 54215 0.66 0.381296
Target:  5'- aGCgCGAcauagagcGGCUGCUcaaaGCGAAGGCG-CGg -3'
miRNA:   3'- gCG-GCU--------CCGACGGc---CGCUUCCGCuGC- -5'
12369 5' -62.4 NC_003324.1 + 53675 0.66 0.407092
Target:  5'- gCGCCGAGcUUGauaCGGCGAaacAGGCGcUGg -3'
miRNA:   3'- -GCGGCUCcGACg--GCCGCU---UCCGCuGC- -5'
12369 5' -62.4 NC_003324.1 + 53491 0.72 0.144764
Target:  5'- aGCCGAGGCcgaaUGCCGGCGAugcccugaugagcuGGaGAUGg -3'
miRNA:   3'- gCGGCUCCG----ACGGCCGCUu-------------CCgCUGC- -5'
12369 5' -62.4 NC_003324.1 + 52292 0.7 0.221405
Target:  5'- cCGCCcgauucGGGGCgGCCGGCGucuGCGACc -3'
miRNA:   3'- -GCGG------CUCCGaCGGCCGCuucCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 52104 0.68 0.276646
Target:  5'- aCGCCGAcGauuauuuugacgagGUCGGCGAAGGCGAg- -3'
miRNA:   3'- -GCGGCUcCga------------CGGCCGCUUCCGCUgc -5'
12369 5' -62.4 NC_003324.1 + 51396 0.67 0.317291
Target:  5'- uGgCGAGGUU-CCGGUGAAGaucagccGCGGCGa -3'
miRNA:   3'- gCgGCUCCGAcGGCCGCUUC-------CGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 51001 0.67 0.340795
Target:  5'- uCGaCGAGGCU--CGGaCGAAGGcCGACGa -3'
miRNA:   3'- -GCgGCUCCGAcgGCC-GCUUCC-GCUGC- -5'
12369 5' -62.4 NC_003324.1 + 49482 0.7 0.22642
Target:  5'- uGCCaAGG-UGCCGGUccgcaacGAGGGCGGCa -3'
miRNA:   3'- gCGGcUCCgACGGCCG-------CUUCCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 49316 0.66 0.3639
Target:  5'- cCGUCG-GGCUGCCcgaucauGGCGucgcAGGCGuuCGg -3'
miRNA:   3'- -GCGGCuCCGACGG-------CCGCu---UCCGCu-GC- -5'
12369 5' -62.4 NC_003324.1 + 49256 0.66 0.356615
Target:  5'- aGCCGAucgaGGCUGUCgauGGUGccuucgguGGCGACGu -3'
miRNA:   3'- gCGGCU----CCGACGG---CCGCuu------CCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 49114 0.67 0.348641
Target:  5'- cCGCCgcgggaGAGGUgagaagcaugGCC-GCGAGGGCGGCc -3'
miRNA:   3'- -GCGG------CUCCGa---------CGGcCGCUUCCGCUGc -5'
12369 5' -62.4 NC_003324.1 + 48977 0.67 0.325489
Target:  5'- gGCgGGuGGCggaguccuggaUGCgGGCGAAGGCG-CGa -3'
miRNA:   3'- gCGgCU-CCG-----------ACGgCCGCUUCCGCuGC- -5'
12369 5' -62.4 NC_003324.1 + 48805 0.66 0.372944
Target:  5'- aGCCGgaAGG-UGCCaccgaGGCcaauGggGGCGACGa -3'
miRNA:   3'- gCGGC--UCCgACGG-----CCG----CuuCCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 45694 0.66 0.364716
Target:  5'- uCGgCGAGGCgugaGCagGGCaaucAGGCGACGg -3'
miRNA:   3'- -GCgGCUCCGa---CGg-CCGcu--UCCGCUGC- -5'
12369 5' -62.4 NC_003324.1 + 44766 0.68 0.269422
Target:  5'- aCGUCGAGGCUGCCaacaccacgaucGaCGAAGugcGCGACa -3'
miRNA:   3'- -GCGGCUCCGACGG------------CcGCUUC---CGCUGc -5'
12369 5' -62.4 NC_003324.1 + 44435 0.66 0.407092
Target:  5'- gCGCCGAGacuucggucGCUgaugGCCGGCGuuugaaacGGCGAUu -3'
miRNA:   3'- -GCGGCUC---------CGA----CGGCCGCuu------CCGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.