Results 41 - 60 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12369 | 5' | -62.4 | NC_003324.1 | + | 26292 | 0.67 | 0.340795 |
Target: 5'- uGCU---GCUGCCGaGCGAGGG-GACGa -3' miRNA: 3'- gCGGcucCGACGGC-CGCUUCCgCUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 49114 | 0.67 | 0.348641 |
Target: 5'- cCGCCgcgggaGAGGUgagaagcaugGCC-GCGAGGGCGGCc -3' miRNA: 3'- -GCGG------CUCCGa---------CGGcCGCUUCCGCUGc -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 12518 | 0.66 | 0.356615 |
Target: 5'- aCGaCG-GGCUGgUGGCaguucGAGGCGACGg -3' miRNA: 3'- -GCgGCuCCGACgGCCGc----UUCCGCUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 40003 | 0.66 | 0.356615 |
Target: 5'- uGgCGAGGgUGuuGGCGAucGUGAUGu -3' miRNA: 3'- gCgGCUCCgACggCCGCUucCGCUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 49256 | 0.66 | 0.356615 |
Target: 5'- aGCCGAucgaGGCUGUCgauGGUGccuucgguGGCGACGu -3' miRNA: 3'- gCGGCU----CCGACGG---CCGCuu------CCGCUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 49316 | 0.66 | 0.3639 |
Target: 5'- cCGUCG-GGCUGCCcgaucauGGCGucgcAGGCGuuCGg -3' miRNA: 3'- -GCGGCuCCGACGG-------CCGCu---UCCGCu-GC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 41675 | 0.66 | 0.364716 |
Target: 5'- uCGCagaGGGGCUuucCCGaGCGAGGGaCGGCc -3' miRNA: 3'- -GCGg--CUCCGAc--GGC-CGCUUCC-GCUGc -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 45694 | 0.66 | 0.364716 |
Target: 5'- uCGgCGAGGCgugaGCagGGCaaucAGGCGACGg -3' miRNA: 3'- -GCgGCUCCGa---CGg-CCGcu--UCCGCUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 39255 | 0.66 | 0.364716 |
Target: 5'- cCGCCGuGGCUGCgccaGAAGGUGcCGa -3' miRNA: 3'- -GCGGCuCCGACGgccgCUUCCGCuGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 44407 | 0.66 | 0.364716 |
Target: 5'- gCGCCGuGGCUGCagaGGCuaucGGCcGCGc -3' miRNA: 3'- -GCGGCuCCGACGg--CCGcuu-CCGcUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 48805 | 0.66 | 0.372944 |
Target: 5'- aGCCGgaAGG-UGCCaccgaGGCcaauGggGGCGACGa -3' miRNA: 3'- gCGGC--UCCgACGG-----CCG----CuuCCGCUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 43334 | 0.66 | 0.381296 |
Target: 5'- uGCC---GCUGCCaGGCGAcccugcAGGCGGCc -3' miRNA: 3'- gCGGcucCGACGG-CCGCU------UCCGCUGc -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 25112 | 0.66 | 0.381296 |
Target: 5'- gCGCCGGGGUagagGUucuUGGCGAugccgccGGUGACGc -3' miRNA: 3'- -GCGGCUCCGa---CG---GCCGCUu------CCGCUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 54215 | 0.66 | 0.381296 |
Target: 5'- aGCgCGAcauagagcGGCUGCUcaaaGCGAAGGCG-CGg -3' miRNA: 3'- gCG-GCU--------CCGACGGc---CGCUUCCGCuGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 30380 | 0.66 | 0.381296 |
Target: 5'- gCGUCGcuacAGGCaUGuUCGGCGGcuuGGGCGACc -3' miRNA: 3'- -GCGGC----UCCG-AC-GGCCGCU---UCCGCUGc -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 27818 | 0.66 | 0.386368 |
Target: 5'- gCGCCGAGccccuuccaGCcGCUGGUGuaguugucgagguAGGCGGCGc -3' miRNA: 3'- -GCGGCUC---------CGaCGGCCGCu------------UCCGCUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 43797 | 0.66 | 0.389773 |
Target: 5'- uGCCG-GGaacGCCGGC-AAGGCG-CGu -3' miRNA: 3'- gCGGCuCCga-CGGCCGcUUCCGCuGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 18802 | 0.66 | 0.389773 |
Target: 5'- uGCgCG-GGUccaugGCgCGGCGAAGGuCGGCGc -3' miRNA: 3'- gCG-GCuCCGa----CG-GCCGCUUCC-GCUGC- -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 2518 | 0.66 | 0.389773 |
Target: 5'- gGUgGGGaacaaGCcGCCGGCGucGGCGGCu -3' miRNA: 3'- gCGgCUC-----CGaCGGCCGCuuCCGCUGc -5' |
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12369 | 5' | -62.4 | NC_003324.1 | + | 34900 | 0.66 | 0.398372 |
Target: 5'- aCGgCGA-GCUGCaGGCGAAGGaGAUGc -3' miRNA: 3'- -GCgGCUcCGACGgCCGCUUCCgCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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