Results 41 - 60 of 65 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12369 | 5' | -62.4 | NC_003324.1 | + | 31314 | 0.72 | 0.154925 |
Target: 5'- gGCCGGcGGCgcuggcGCUGGCGggGGCaucgucaucGACGa -3' miRNA: 3'- gCGGCU-CCGa-----CGGCCGCuuCCG---------CUGC- -5' |
|||||||
12369 | 5' | -62.4 | NC_003324.1 | + | 57038 | 0.72 | 0.154925 |
Target: 5'- gGCUGGGGagcGgCGGCGAGGGCG-CGg -3' miRNA: 3'- gCGGCUCCga-CgGCCGCUUCCGCuGC- -5' |
|||||||
12369 | 5' | -62.4 | NC_003324.1 | + | 57390 | 0.72 | 0.147053 |
Target: 5'- uGCUGgaGGGCUcgGCggaGGCGAGGGCGGCa -3' miRNA: 3'- gCGGC--UCCGA--CGg--CCGCUUCCGCUGc -5' |
|||||||
12369 | 5' | -62.4 | NC_003324.1 | + | 30460 | 0.73 | 0.139548 |
Target: 5'- gGUCGAgGGCgGCaUGGcCGAGGGCGACGc -3' miRNA: 3'- gCGGCU-CCGaCG-GCC-GCUUCCGCUGC- -5' |
|||||||
12369 | 5' | -62.4 | NC_003324.1 | + | 21388 | 0.73 | 0.125581 |
Target: 5'- -aUCGAGGauaucGCCGGCG-AGGCGGCGa -3' miRNA: 3'- gcGGCUCCga---CGGCCGCuUCCGCUGC- -5' |
|||||||
12369 | 5' | -62.4 | NC_003324.1 | + | 35209 | 0.73 | 0.125581 |
Target: 5'- gCGCUGAGGUcaacgGCgaCGGCGcuGGCGACGa -3' miRNA: 3'- -GCGGCUCCGa----CG--GCCGCuuCCGCUGC- -5' |
|||||||
12369 | 5' | -62.4 | NC_003324.1 | + | 13179 | 0.75 | 0.098771 |
Target: 5'- cCGUcagCGAGGCUGCgucggCGGCGGucGGCGGCGg -3' miRNA: 3'- -GCG---GCUCCGACG-----GCCGCUu-CCGCUGC- -5' |
|||||||
12369 | 5' | -62.4 | NC_003324.1 | + | 25651 | 0.79 | 0.051329 |
Target: 5'- cCGCCGAGGacaaucUCGGCGAAGGCGGCc -3' miRNA: 3'- -GCGGCUCCgac---GGCCGCUUCCGCUGc -5' |
|||||||
12369 | 5' | -62.4 | NC_003324.1 | + | 32555 | 1.08 | 0.000279 |
Target: 5'- uCGCCGAGGCUGCCGGCGAAGGCGACGa -3' miRNA: 3'- -GCGGCUCCGACGGCCGCUUCCGCUGC- -5' |
|||||||
12369 | 5' | -62.4 | NC_003324.1 | + | 20422 | 0.67 | 0.31803 |
Target: 5'- uGUCGAaccGGCuucUGUCGGCGAuGGCGAa- -3' miRNA: 3'- gCGGCU---CCG---ACGGCCGCUuCCGCUgc -5' |
|||||||
12369 | 5' | -62.4 | NC_003324.1 | + | 48977 | 0.67 | 0.325489 |
Target: 5'- gGCgGGuGGCggaguccuggaUGCgGGCGAAGGCG-CGa -3' miRNA: 3'- gCGgCU-CCG-----------ACGgCCGCUUCCGCuGC- -5' |
|||||||
12369 | 5' | -62.4 | NC_003324.1 | + | 20305 | 0.67 | 0.333077 |
Target: 5'- gGCUGcauuccaucuGGGCUGCCGGCcauaccGGGCG-CGu -3' miRNA: 3'- gCGGC----------UCCGACGGCCGcu----UCCGCuGC- -5' |
|||||||
12369 | 5' | -62.4 | NC_003324.1 | + | 20251 | 0.67 | 0.340795 |
Target: 5'- uGaCCGAGGCUGCCGGCa---GCGu-- -3' miRNA: 3'- gC-GGCUCCGACGGCCGcuucCGCugc -5' |
|||||||
12369 | 5' | -62.4 | NC_003324.1 | + | 26292 | 0.67 | 0.340795 |
Target: 5'- uGCU---GCUGCCGaGCGAGGG-GACGa -3' miRNA: 3'- gCGGcucCGACGGC-CGCUUCCgCUGC- -5' |
|||||||
12369 | 5' | -62.4 | NC_003324.1 | + | 49114 | 0.67 | 0.348641 |
Target: 5'- cCGCCgcgggaGAGGUgagaagcaugGCC-GCGAGGGCGGCc -3' miRNA: 3'- -GCGG------CUCCGa---------CGGcCGCUUCCGCUGc -5' |
|||||||
12369 | 5' | -62.4 | NC_003324.1 | + | 49256 | 0.66 | 0.356615 |
Target: 5'- aGCCGAucgaGGCUGUCgauGGUGccuucgguGGCGACGu -3' miRNA: 3'- gCGGCU----CCGACGG---CCGCuu------CCGCUGC- -5' |
|||||||
12369 | 5' | -62.4 | NC_003324.1 | + | 49316 | 0.66 | 0.3639 |
Target: 5'- cCGUCG-GGCUGCCcgaucauGGCGucgcAGGCGuuCGg -3' miRNA: 3'- -GCGGCuCCGACGG-------CCGCu---UCCGCu-GC- -5' |
|||||||
12369 | 5' | -62.4 | NC_003324.1 | + | 44407 | 0.66 | 0.364716 |
Target: 5'- gCGCCGuGGCUGCagaGGCuaucGGCcGCGc -3' miRNA: 3'- -GCGGCuCCGACGg--CCGcuu-CCGcUGC- -5' |
|||||||
12369 | 5' | -62.4 | NC_003324.1 | + | 41675 | 0.66 | 0.364716 |
Target: 5'- uCGCagaGGGGCUuucCCGaGCGAGGGaCGGCc -3' miRNA: 3'- -GCGg--CUCCGAc--GGC-CGCUUCC-GCUGc -5' |
|||||||
12369 | 5' | -62.4 | NC_003324.1 | + | 39255 | 0.66 | 0.364716 |
Target: 5'- cCGCCGuGGCUGCgccaGAAGGUGcCGa -3' miRNA: 3'- -GCGGCuCCGACGgccgCUUCCGCuGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home