miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12376 3' -57.9 NC_003324.1 + 35124 1.1 0.000464
Target:  5'- cAGCGACGACGAUCAGGCCGCUGCUGCc -3'
miRNA:   3'- -UCGCUGCUGCUAGUCCGGCGACGACG- -5'
12376 3' -57.9 NC_003324.1 + 25593 0.82 0.057476
Target:  5'- cGGUGAUGACauaGUCugucGGCCGCUGCUGCg -3'
miRNA:   3'- -UCGCUGCUGc--UAGu---CCGGCGACGACG- -5'
12376 3' -57.9 NC_003324.1 + 32911 0.8 0.080766
Target:  5'- cAGUGGCGAUGAUCgAGGCgGCUGCccgccaUGCg -3'
miRNA:   3'- -UCGCUGCUGCUAG-UCCGgCGACG------ACG- -5'
12376 3' -57.9 NC_003324.1 + 24001 0.77 0.126069
Target:  5'- uGGUagGGCGGCGGUaGGGCUGCUGCgUGCg -3'
miRNA:   3'- -UCG--CUGCUGCUAgUCCGGCGACG-ACG- -5'
12376 3' -57.9 NC_003324.1 + 29460 0.75 0.174458
Target:  5'- -uCGACGAUGA-CAcGGCCGCcugGCUGCg -3'
miRNA:   3'- ucGCUGCUGCUaGU-CCGGCGa--CGACG- -5'
12376 3' -57.9 NC_003324.1 + 13164 0.73 0.215346
Target:  5'- cGuCGGCGGCGGUCGgcGGCgGCgguaccgGCUGCa -3'
miRNA:   3'- uC-GCUGCUGCUAGU--CCGgCGa------CGACG- -5'
12376 3' -57.9 NC_003324.1 + 26319 0.73 0.232685
Target:  5'- cGUGGCaGAUGGUCAGGgagaccuacUUGCUGCUGCc -3'
miRNA:   3'- uCGCUG-CUGCUAGUCC---------GGCGACGACG- -5'
12376 3' -57.9 NC_003324.1 + 35483 0.73 0.23872
Target:  5'- uGGgGACGGCGAUC--GCCGUaccgGCUGCu -3'
miRNA:   3'- -UCgCUGCUGCUAGucCGGCGa---CGACG- -5'
12376 3' -57.9 NC_003324.1 + 5098 0.73 0.244886
Target:  5'- cGCGAuCGACGAUCuGcGCCGCUuuuucCUGCc -3'
miRNA:   3'- uCGCU-GCUGCUAGuC-CGGCGAc----GACG- -5'
12376 3' -57.9 NC_003324.1 + 47631 0.72 0.257614
Target:  5'- -aUGACGGCGAcCGGGCCGCcaucgucgaGCUGUg -3'
miRNA:   3'- ucGCUGCUGCUaGUCCGGCGa--------CGACG- -5'
12376 3' -57.9 NC_003324.1 + 32536 0.72 0.270878
Target:  5'- aGGCGACGAgGG-CAuGGCUGCcGUUGCc -3'
miRNA:   3'- -UCGCUGCUgCUaGU-CCGGCGaCGACG- -5'
12376 3' -57.9 NC_003324.1 + 44826 0.72 0.270878
Target:  5'- aGGgGGCGGCG-UCAuuGGCgugccCGCUGCUGCc -3'
miRNA:   3'- -UCgCUGCUGCuAGU--CCG-----GCGACGACG- -5'
12376 3' -57.9 NC_003324.1 + 48168 0.71 0.299044
Target:  5'- cAGCGACGugGucccuAUC-GGCCGCguucGCUGg -3'
miRNA:   3'- -UCGCUGCugC-----UAGuCCGGCGa---CGACg -5'
12376 3' -57.9 NC_003324.1 + 30315 0.71 0.299044
Target:  5'- uAGCGACGccggaGAUCaggaAGGCCuGCgaUGCUGCa -3'
miRNA:   3'- -UCGCUGCug---CUAG----UCCGG-CG--ACGACG- -5'
12376 3' -57.9 NC_003324.1 + 29892 0.71 0.313956
Target:  5'- -aCGGCG-CGAUCuucGGCgCGCUGCUGg -3'
miRNA:   3'- ucGCUGCuGCUAGu--CCG-GCGACGACg -5'
12376 3' -57.9 NC_003324.1 + 35310 0.71 0.313956
Target:  5'- cGCGcCGGCgGAUUGcGCCgGCUGCUGCg -3'
miRNA:   3'- uCGCuGCUG-CUAGUcCGG-CGACGACG- -5'
12376 3' -57.9 NC_003324.1 + 26161 0.71 0.324726
Target:  5'- uGGCGGCcugcaucauucugucGGCGGUCucGCUGCgggGCUGCg -3'
miRNA:   3'- -UCGCUG---------------CUGCUAGucCGGCGa--CGACG- -5'
12376 3' -57.9 NC_003324.1 + 30411 0.7 0.353667
Target:  5'- --gGACGGCuuccGAUUGGGCCaGCUGCUcGCg -3'
miRNA:   3'- ucgCUGCUG----CUAGUCCGG-CGACGA-CG- -5'
12376 3' -57.9 NC_003324.1 + 52658 0.7 0.362023
Target:  5'- gAGCGuCGGCGAUguugacggugaUAGGCUGUcucaugcuugUGCUGCc -3'
miRNA:   3'- -UCGCuGCUGCUA-----------GUCCGGCG----------ACGACG- -5'
12376 3' -57.9 NC_003324.1 + 39668 0.7 0.370515
Target:  5'- uGuCGAgGACGAUCcggAGGCUGgUGCUGa -3'
miRNA:   3'- uC-GCUgCUGCUAG---UCCGGCgACGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.