miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12376 3' -57.9 NC_003324.1 + 1232 0.66 0.554637
Target:  5'- aAGCGAuCGGCaaacagCAGGCCGCUGa--- -3'
miRNA:   3'- -UCGCU-GCUGcua---GUCCGGCGACgacg -5'
12376 3' -57.9 NC_003324.1 + 5098 0.73 0.244886
Target:  5'- cGCGAuCGACGAUCuGcGCCGCUuuuucCUGCc -3'
miRNA:   3'- uCGCU-GCUGCUAGuC-CGGCGAc----GACG- -5'
12376 3' -57.9 NC_003324.1 + 5350 0.66 0.586623
Target:  5'- uAGCGAgauCGAgGAuaUCGccuGCCGCUGgUGCg -3'
miRNA:   3'- -UCGCU---GCUgCU--AGUc--CGGCGACgACG- -5'
12376 3' -57.9 NC_003324.1 + 8407 0.67 0.544084
Target:  5'- cGUGAUG-CgGGUCAGGgauuuCCGCcgGCUGCa -3'
miRNA:   3'- uCGCUGCuG-CUAGUCC-----GGCGa-CGACG- -5'
12376 3' -57.9 NC_003324.1 + 9002 0.68 0.486389
Target:  5'- uGuCGACGAgGGUCAGcggaaaccaaucacuGCCGCccGCUGUg -3'
miRNA:   3'- uC-GCUGCUgCUAGUC---------------CGGCGa-CGACG- -5'
12376 3' -57.9 NC_003324.1 + 9165 0.69 0.376541
Target:  5'- uAGCGGucgauaacaaUGGCGAUCggaucgucguguuuAGGaCCGCUGCUGg -3'
miRNA:   3'- -UCGCU----------GCUGCUAG--------------UCC-GGCGACGACg -5'
12376 3' -57.9 NC_003324.1 + 10681 0.69 0.379143
Target:  5'- gGGCGACuggggGACGGUU--GCCGUUGcCUGCa -3'
miRNA:   3'- -UCGCUG-----CUGCUAGucCGGCGAC-GACG- -5'
12376 3' -57.9 NC_003324.1 + 12540 0.66 0.554637
Target:  5'- aGGCGACGGuuCGAUCAGGCUGgUuacggaacaGCUu- -3'
miRNA:   3'- -UCGCUGCU--GCUAGUCCGGCgA---------CGAcg -5'
12376 3' -57.9 NC_003324.1 + 13164 0.73 0.215346
Target:  5'- cGuCGGCGGCGGUCGgcGGCgGCgguaccgGCUGCa -3'
miRNA:   3'- uC-GCUGCUGCUAGU--CCGgCGa------CGACG- -5'
12376 3' -57.9 NC_003324.1 + 13512 0.68 0.441255
Target:  5'- cGCGGCGGCGGugcacuggacaccUCAgucgccuguaucuGGCCGa-GCUGCa -3'
miRNA:   3'- uCGCUGCUGCU-------------AGU-------------CCGGCgaCGACG- -5'
12376 3' -57.9 NC_003324.1 + 14592 0.68 0.452804
Target:  5'- aAGCGGCcGGCGGcgCAGGCgGUaGCgugGCg -3'
miRNA:   3'- -UCGCUG-CUGCUa-GUCCGgCGaCGa--CG- -5'
12376 3' -57.9 NC_003324.1 + 16420 0.68 0.472412
Target:  5'- cGCGAuCGACGGcaacgccgUCGcGGaCCGCUGCgucUGCu -3'
miRNA:   3'- uCGCU-GCUGCU--------AGU-CC-GGCGACG---ACG- -5'
12376 3' -57.9 NC_003324.1 + 17136 0.67 0.533597
Target:  5'- cGGUGugG-CGAUCacgaAGGagaCGCUGCaGCg -3'
miRNA:   3'- -UCGCugCuGCUAG----UCCg--GCGACGaCG- -5'
12376 3' -57.9 NC_003324.1 + 18238 0.66 0.597369
Target:  5'- cGGCGGucagguugccauCGACGA-CAGaGCCGCgaccGCUGa -3'
miRNA:   3'- -UCGCU------------GCUGCUaGUC-CGGCGa---CGACg -5'
12376 3' -57.9 NC_003324.1 + 24001 0.77 0.126069
Target:  5'- uGGUagGGCGGCGGUaGGGCUGCUGCgUGCg -3'
miRNA:   3'- -UCG--CUGCUGCUAgUCCGGCGACG-ACG- -5'
12376 3' -57.9 NC_003324.1 + 25593 0.82 0.057476
Target:  5'- cGGUGAUGACauaGUCugucGGCCGCUGCUGCg -3'
miRNA:   3'- -UCGCUGCUGc--UAGu---CCGGCGACGACG- -5'
12376 3' -57.9 NC_003324.1 + 26161 0.71 0.324726
Target:  5'- uGGCGGCcugcaucauucugucGGCGGUCucGCUGCgggGCUGCg -3'
miRNA:   3'- -UCGCUG---------------CUGCUAGucCGGCGa--CGACG- -5'
12376 3' -57.9 NC_003324.1 + 26319 0.73 0.232685
Target:  5'- cGUGGCaGAUGGUCAGGgagaccuacUUGCUGCUGCc -3'
miRNA:   3'- uCGCUG-CUGCUAGUCC---------GGCGACGACG- -5'
12376 3' -57.9 NC_003324.1 + 27060 0.67 0.544084
Target:  5'- cGCGACGcgGCGuuaccguUguGGCCGgUGCgGCu -3'
miRNA:   3'- uCGCUGC--UGCu------AguCCGGCgACGaCG- -5'
12376 3' -57.9 NC_003324.1 + 28541 0.67 0.533597
Target:  5'- cGUGACGugGAacaAGGCCgGCaacgGCUGg -3'
miRNA:   3'- uCGCUGCugCUag-UCCGG-CGa---CGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.