miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12376 3' -57.9 NC_003324.1 + 52658 0.7 0.362023
Target:  5'- gAGCGuCGGCGAUguugacggugaUAGGCUGUcucaugcuugUGCUGCc -3'
miRNA:   3'- -UCGCuGCUGCUA-----------GUCCGGCG----------ACGACG- -5'
12376 3' -57.9 NC_003324.1 + 51421 0.68 0.433648
Target:  5'- cGCGGCGAcCGGauUUGGGUgcgcgagaaCGCUGCUGUc -3'
miRNA:   3'- uCGCUGCU-GCU--AGUCCG---------GCGACGACG- -5'
12376 3' -57.9 NC_003324.1 + 48168 0.71 0.299044
Target:  5'- cAGCGACGugGucccuAUC-GGCCGCguucGCUGg -3'
miRNA:   3'- -UCGCUGCugC-----UAGuCCGGCGa---CGACg -5'
12376 3' -57.9 NC_003324.1 + 48068 0.69 0.395902
Target:  5'- cGGCGAUGAuCGAUCGcuucaugaggaucGcGCCgacgugGCUGCUGCu -3'
miRNA:   3'- -UCGCUGCU-GCUAGU-------------C-CGG------CGACGACG- -5'
12376 3' -57.9 NC_003324.1 + 47631 0.72 0.257614
Target:  5'- -aUGACGGCGAcCGGGCCGCcaucgucgaGCUGUg -3'
miRNA:   3'- ucGCUGCUGCUaGUCCGGCGa--------CGACG- -5'
12376 3' -57.9 NC_003324.1 + 44826 0.72 0.270878
Target:  5'- aGGgGGCGGCG-UCAuuGGCgugccCGCUGCUGCc -3'
miRNA:   3'- -UCgCUGCUGCuAGU--CCG-----GCGACGACG- -5'
12376 3' -57.9 NC_003324.1 + 42742 0.67 0.502599
Target:  5'- uGGUGGCccGGCGAau-GGCCuuGCUGUUGCa -3'
miRNA:   3'- -UCGCUG--CUGCUaguCCGG--CGACGACG- -5'
12376 3' -57.9 NC_003324.1 + 40966 0.69 0.424249
Target:  5'- cAGCGuuCGuugaaguCGAUCGGGCCGCaUGCg-- -3'
miRNA:   3'- -UCGCu-GCu------GCUAGUCCGGCG-ACGacg -5'
12376 3' -57.9 NC_003324.1 + 40936 0.69 0.379143
Target:  5'- cGCGGgGGCaGAUCAGcaaucaCCGCUGCgagGCg -3'
miRNA:   3'- uCGCUgCUG-CUAGUCc-----GGCGACGa--CG- -5'
12376 3' -57.9 NC_003324.1 + 39668 0.7 0.370515
Target:  5'- uGuCGAgGACGAUCcggAGGCUGgUGCUGa -3'
miRNA:   3'- uC-GCUgCUGCUAG---UCCGGCgACGACg -5'
12376 3' -57.9 NC_003324.1 + 38436 0.67 0.502599
Target:  5'- -aCGACGGCGAcCAGcGCCGCcccGgUGCc -3'
miRNA:   3'- ucGCUGCUGCUaGUC-CGGCGa--CgACG- -5'
12376 3' -57.9 NC_003324.1 + 35795 0.66 0.553579
Target:  5'- uGGCGAUGGCGAUCuGGggguugaCCGgaGCcaGCu -3'
miRNA:   3'- -UCGCUGCUGCUAGuCC-------GGCgaCGa-CG- -5'
12376 3' -57.9 NC_003324.1 + 35483 0.73 0.23872
Target:  5'- uGGgGACGGCGAUC--GCCGUaccgGCUGCu -3'
miRNA:   3'- -UCgCUGCUGCUAGucCGGCGa---CGACG- -5'
12376 3' -57.9 NC_003324.1 + 35464 0.67 0.492439
Target:  5'- cGCgGGCGGcCGAgCAGGCUGCaGCaGCa -3'
miRNA:   3'- uCG-CUGCU-GCUaGUCCGGCGaCGaCG- -5'
12376 3' -57.9 NC_003324.1 + 35310 0.71 0.313956
Target:  5'- cGCGcCGGCgGAUUGcGCCgGCUGCUGCg -3'
miRNA:   3'- uCGCuGCUG-CUAGUcCGG-CGACGACG- -5'
12376 3' -57.9 NC_003324.1 + 35124 1.1 0.000464
Target:  5'- cAGCGACGACGAUCAGGCCGCUGCUGCc -3'
miRNA:   3'- -UCGCUGCUGCUAGUCCGGCGACGACG- -5'
12376 3' -57.9 NC_003324.1 + 35030 0.68 0.442211
Target:  5'- cAGCGGCGGCGG-CAGcagcggccugaucGUCGUcGCUGCc -3'
miRNA:   3'- -UCGCUGCUGCUaGUC-------------CGGCGaCGACG- -5'
12376 3' -57.9 NC_003324.1 + 32911 0.8 0.080766
Target:  5'- cAGUGGCGAUGAUCgAGGCgGCUGCccgccaUGCg -3'
miRNA:   3'- -UCGCUGCUGCUAG-UCCGgCGACG------ACG- -5'
12376 3' -57.9 NC_003324.1 + 32536 0.72 0.270878
Target:  5'- aGGCGACGAgGG-CAuGGCUGCcGUUGCc -3'
miRNA:   3'- -UCGCUGCUgCUaGU-CCGGCGaCGACG- -5'
12376 3' -57.9 NC_003324.1 + 32382 0.68 0.433648
Target:  5'- uGCGGCGcCGcgCagAGGCCGUUGUcGCc -3'
miRNA:   3'- uCGCUGCuGCuaG--UCCGGCGACGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.