Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12376 | 3' | -57.9 | NC_003324.1 | + | 31071 | 0.69 | 0.418668 |
Target: 5'- uGCGACGGCcugauuguccgugccGGUCcuugcGGCaaugCGCUGCUGCu -3' miRNA: 3'- uCGCUGCUG---------------CUAGu----CCG----GCGACGACG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 30523 | 0.69 | 0.414972 |
Target: 5'- cGUGGCGACcuUCGcuGCCGCUGCcGCu -3' miRNA: 3'- uCGCUGCUGcuAGUc-CGGCGACGaCG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 30411 | 0.7 | 0.353667 |
Target: 5'- --gGACGGCuuccGAUUGGGCCaGCUGCUcGCg -3' miRNA: 3'- ucgCUGCUG----CUAGUCCGG-CGACGA-CG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 30315 | 0.71 | 0.299044 |
Target: 5'- uAGCGACGccggaGAUCaggaAGGCCuGCgaUGCUGCa -3' miRNA: 3'- -UCGCUGCug---CUAG----UCCGG-CG--ACGACG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 30062 | 0.66 | 0.596293 |
Target: 5'- -aCGcCGcCGGUCGcgacaccGGCCGCUGCgGCu -3' miRNA: 3'- ucGCuGCuGCUAGU-------CCGGCGACGaCG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 29970 | 0.66 | 0.601675 |
Target: 5'- uAGCGGCGGCagccggguccgcaucGAUCccGGCCGgUGCacucugGCg -3' miRNA: 3'- -UCGCUGCUG---------------CUAGu-CCGGCgACGa-----CG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 29892 | 0.71 | 0.313956 |
Target: 5'- -aCGGCG-CGAUCuucGGCgCGCUGCUGg -3' miRNA: 3'- ucGCUGCuGCUAGu--CCG-GCGACGACg -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 29738 | 0.67 | 0.51182 |
Target: 5'- --aGACGGCGGacucgaucccggcUCAGGCgGCggcGUUGCg -3' miRNA: 3'- ucgCUGCUGCU-------------AGUCCGgCGa--CGACG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 29650 | 0.7 | 0.370515 |
Target: 5'- gAGCGACGAgGccuUgAGGCCGCUugaGCcccgUGCa -3' miRNA: 3'- -UCGCUGCUgCu--AgUCCGGCGA---CG----ACG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 29460 | 0.75 | 0.174458 |
Target: 5'- -uCGACGAUGA-CAcGGCCGCcugGCUGCg -3' miRNA: 3'- ucGCUGCUGCUaGU-CCGGCGa--CGACG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 28541 | 0.67 | 0.533597 |
Target: 5'- cGUGACGugGAacaAGGCCgGCaacgGCUGg -3' miRNA: 3'- uCGCUGCugCUag-UCCGG-CGa---CGACg -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 27060 | 0.67 | 0.544084 |
Target: 5'- cGCGACGcgGCGuuaccguUguGGCCGgUGCgGCu -3' miRNA: 3'- uCGCUGC--UGCu------AguCCGGCgACGaCG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 26319 | 0.73 | 0.232685 |
Target: 5'- cGUGGCaGAUGGUCAGGgagaccuacUUGCUGCUGCc -3' miRNA: 3'- uCGCUG-CUGCUAGUCC---------GGCGACGACG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 26161 | 0.71 | 0.324726 |
Target: 5'- uGGCGGCcugcaucauucugucGGCGGUCucGCUGCgggGCUGCg -3' miRNA: 3'- -UCGCUG---------------CUGCUAGucCGGCGa--CGACG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 25593 | 0.82 | 0.057476 |
Target: 5'- cGGUGAUGACauaGUCugucGGCCGCUGCUGCg -3' miRNA: 3'- -UCGCUGCUGc--UAGu---CCGGCGACGACG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 24001 | 0.77 | 0.126069 |
Target: 5'- uGGUagGGCGGCGGUaGGGCUGCUGCgUGCg -3' miRNA: 3'- -UCG--CUGCUGCUAgUCCGGCGACG-ACG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 18238 | 0.66 | 0.597369 |
Target: 5'- cGGCGGucagguugccauCGACGA-CAGaGCCGCgaccGCUGa -3' miRNA: 3'- -UCGCU------------GCUGCUaGUC-CGGCGa---CGACg -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 17136 | 0.67 | 0.533597 |
Target: 5'- cGGUGugG-CGAUCacgaAGGagaCGCUGCaGCg -3' miRNA: 3'- -UCGCugCuGCUAG----UCCg--GCGACGaCG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 16420 | 0.68 | 0.472412 |
Target: 5'- cGCGAuCGACGGcaacgccgUCGcGGaCCGCUGCgucUGCu -3' miRNA: 3'- uCGCU-GCUGCU--------AGU-CC-GGCGACG---ACG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 14592 | 0.68 | 0.452804 |
Target: 5'- aAGCGGCcGGCGGcgCAGGCgGUaGCgugGCg -3' miRNA: 3'- -UCGCUG-CUGCUa-GUCCGgCGaCGa--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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