Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12376 | 3' | -57.9 | NC_003324.1 | + | 5098 | 0.73 | 0.244886 |
Target: 5'- cGCGAuCGACGAUCuGcGCCGCUuuuucCUGCc -3' miRNA: 3'- uCGCU-GCUGCUAGuC-CGGCGAc----GACG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 47631 | 0.72 | 0.257614 |
Target: 5'- -aUGACGGCGAcCGGGCCGCcaucgucgaGCUGUg -3' miRNA: 3'- ucGCUGCUGCUaGUCCGGCGa--------CGACG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 44826 | 0.72 | 0.270878 |
Target: 5'- aGGgGGCGGCG-UCAuuGGCgugccCGCUGCUGCc -3' miRNA: 3'- -UCgCUGCUGCuAGU--CCG-----GCGACGACG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 30315 | 0.71 | 0.299044 |
Target: 5'- uAGCGACGccggaGAUCaggaAGGCCuGCgaUGCUGCa -3' miRNA: 3'- -UCGCUGCug---CUAG----UCCGG-CG--ACGACG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 30411 | 0.7 | 0.353667 |
Target: 5'- --gGACGGCuuccGAUUGGGCCaGCUGCUcGCg -3' miRNA: 3'- ucgCUGCUG----CUAGUCCGG-CGACGA-CG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 26161 | 0.71 | 0.324726 |
Target: 5'- uGGCGGCcugcaucauucugucGGCGGUCucGCUGCgggGCUGCg -3' miRNA: 3'- -UCGCUG---------------CUGCUAGucCGGCGa--CGACG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 35310 | 0.71 | 0.313956 |
Target: 5'- cGCGcCGGCgGAUUGcGCCgGCUGCUGCg -3' miRNA: 3'- uCGCuGCUG-CUAGUcCGG-CGACGACG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 29892 | 0.71 | 0.313956 |
Target: 5'- -aCGGCG-CGAUCuucGGCgCGCUGCUGg -3' miRNA: 3'- ucGCUGCuGCUAGu--CCG-GCGACGACg -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 48168 | 0.71 | 0.299044 |
Target: 5'- cAGCGACGugGucccuAUC-GGCCGCguucGCUGg -3' miRNA: 3'- -UCGCUGCugC-----UAGuCCGGCGa---CGACg -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 32382 | 0.68 | 0.433648 |
Target: 5'- uGCGGCGcCGcgCagAGGCCGUUGUcGCc -3' miRNA: 3'- uCGCUGCuGCuaG--UCCGGCGACGaCG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 13512 | 0.68 | 0.441255 |
Target: 5'- cGCGGCGGCGGugcacuggacaccUCAgucgccuguaucuGGCCGa-GCUGCa -3' miRNA: 3'- uCGCUGCUGCU-------------AGU-------------CCGGCgaCGACG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 16420 | 0.68 | 0.472412 |
Target: 5'- cGCGAuCGACGGcaacgccgUCGcGGaCCGCUGCgucUGCu -3' miRNA: 3'- uCGCU-GCUGCU--------AGU-CC-GGCGACG---ACG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 9002 | 0.68 | 0.486389 |
Target: 5'- uGuCGACGAgGGUCAGcggaaaccaaucacuGCCGCccGCUGUg -3' miRNA: 3'- uC-GCUGCUgCUAGUC---------------CGGCGa-CGACG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 35464 | 0.67 | 0.492439 |
Target: 5'- cGCgGGCGGcCGAgCAGGCUGCaGCaGCa -3' miRNA: 3'- uCG-CUGCU-GCUaGUCCGGCGaCGaCG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 42742 | 0.67 | 0.502599 |
Target: 5'- uGGUGGCccGGCGAau-GGCCuuGCUGUUGCa -3' miRNA: 3'- -UCGCUG--CUGCUaguCCGG--CGACGACG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 38436 | 0.67 | 0.502599 |
Target: 5'- -aCGACGGCGAcCAGcGCCGCcccGgUGCc -3' miRNA: 3'- ucGCUGCUGCUaGUC-CGGCGa--CgACG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 29738 | 0.67 | 0.51182 |
Target: 5'- --aGACGGCGGacucgaucccggcUCAGGCgGCggcGUUGCg -3' miRNA: 3'- ucgCUGCUGCU-------------AGUCCGgCGa--CGACG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 28541 | 0.67 | 0.533597 |
Target: 5'- cGUGACGugGAacaAGGCCgGCaacgGCUGg -3' miRNA: 3'- uCGCUGCugCUag-UCCGG-CGa---CGACg -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 17136 | 0.67 | 0.533597 |
Target: 5'- cGGUGugG-CGAUCacgaAGGagaCGCUGCaGCg -3' miRNA: 3'- -UCGCugCuGCUAG----UCCg--GCGACGaCG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 35124 | 1.1 | 0.000464 |
Target: 5'- cAGCGACGACGAUCAGGCCGCUGCUGCc -3' miRNA: 3'- -UCGCUGCUGCUAGUCCGGCGACGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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