miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12376 3' -57.9 NC_003324.1 + 29460 0.75 0.174458
Target:  5'- -uCGACGAUGA-CAcGGCCGCcugGCUGCg -3'
miRNA:   3'- ucGCUGCUGCUaGU-CCGGCGa--CGACG- -5'
12376 3' -57.9 NC_003324.1 + 29650 0.7 0.370515
Target:  5'- gAGCGACGAgGccuUgAGGCCGCUugaGCcccgUGCa -3'
miRNA:   3'- -UCGCUGCUgCu--AgUCCGGCGA---CG----ACG- -5'
12376 3' -57.9 NC_003324.1 + 29738 0.67 0.51182
Target:  5'- --aGACGGCGGacucgaucccggcUCAGGCgGCggcGUUGCg -3'
miRNA:   3'- ucgCUGCUGCU-------------AGUCCGgCGa--CGACG- -5'
12376 3' -57.9 NC_003324.1 + 29892 0.71 0.313956
Target:  5'- -aCGGCG-CGAUCuucGGCgCGCUGCUGg -3'
miRNA:   3'- ucGCUGCuGCUAGu--CCG-GCGACGACg -5'
12376 3' -57.9 NC_003324.1 + 29970 0.66 0.601675
Target:  5'- uAGCGGCGGCagccggguccgcaucGAUCccGGCCGgUGCacucugGCg -3'
miRNA:   3'- -UCGCUGCUG---------------CUAGu-CCGGCgACGa-----CG- -5'
12376 3' -57.9 NC_003324.1 + 30062 0.66 0.596293
Target:  5'- -aCGcCGcCGGUCGcgacaccGGCCGCUGCgGCu -3'
miRNA:   3'- ucGCuGCuGCUAGU-------CCGGCGACGaCG- -5'
12376 3' -57.9 NC_003324.1 + 30315 0.71 0.299044
Target:  5'- uAGCGACGccggaGAUCaggaAGGCCuGCgaUGCUGCa -3'
miRNA:   3'- -UCGCUGCug---CUAG----UCCGG-CG--ACGACG- -5'
12376 3' -57.9 NC_003324.1 + 30411 0.7 0.353667
Target:  5'- --gGACGGCuuccGAUUGGGCCaGCUGCUcGCg -3'
miRNA:   3'- ucgCUGCUG----CUAGUCCGG-CGACGA-CG- -5'
12376 3' -57.9 NC_003324.1 + 30523 0.69 0.414972
Target:  5'- cGUGGCGACcuUCGcuGCCGCUGCcGCu -3'
miRNA:   3'- uCGCUGCUGcuAGUc-CGGCGACGaCG- -5'
12376 3' -57.9 NC_003324.1 + 31071 0.69 0.418668
Target:  5'- uGCGACGGCcugauuguccgugccGGUCcuugcGGCaaugCGCUGCUGCu -3'
miRNA:   3'- uCGCUGCUG---------------CUAGu----CCG----GCGACGACG- -5'
12376 3' -57.9 NC_003324.1 + 32382 0.68 0.433648
Target:  5'- uGCGGCGcCGcgCagAGGCCGUUGUcGCc -3'
miRNA:   3'- uCGCUGCuGCuaG--UCCGGCGACGaCG- -5'
12376 3' -57.9 NC_003324.1 + 32536 0.72 0.270878
Target:  5'- aGGCGACGAgGG-CAuGGCUGCcGUUGCc -3'
miRNA:   3'- -UCGCUGCUgCUaGU-CCGGCGaCGACG- -5'
12376 3' -57.9 NC_003324.1 + 32911 0.8 0.080766
Target:  5'- cAGUGGCGAUGAUCgAGGCgGCUGCccgccaUGCg -3'
miRNA:   3'- -UCGCUGCUGCUAG-UCCGgCGACG------ACG- -5'
12376 3' -57.9 NC_003324.1 + 35030 0.68 0.442211
Target:  5'- cAGCGGCGGCGG-CAGcagcggccugaucGUCGUcGCUGCc -3'
miRNA:   3'- -UCGCUGCUGCUaGUC-------------CGGCGaCGACG- -5'
12376 3' -57.9 NC_003324.1 + 35124 1.1 0.000464
Target:  5'- cAGCGACGACGAUCAGGCCGCUGCUGCc -3'
miRNA:   3'- -UCGCUGCUGCUAGUCCGGCGACGACG- -5'
12376 3' -57.9 NC_003324.1 + 35310 0.71 0.313956
Target:  5'- cGCGcCGGCgGAUUGcGCCgGCUGCUGCg -3'
miRNA:   3'- uCGCuGCUG-CUAGUcCGG-CGACGACG- -5'
12376 3' -57.9 NC_003324.1 + 35464 0.67 0.492439
Target:  5'- cGCgGGCGGcCGAgCAGGCUGCaGCaGCa -3'
miRNA:   3'- uCG-CUGCU-GCUaGUCCGGCGaCGaCG- -5'
12376 3' -57.9 NC_003324.1 + 35483 0.73 0.23872
Target:  5'- uGGgGACGGCGAUC--GCCGUaccgGCUGCu -3'
miRNA:   3'- -UCgCUGCUGCUAGucCGGCGa---CGACG- -5'
12376 3' -57.9 NC_003324.1 + 35795 0.66 0.553579
Target:  5'- uGGCGAUGGCGAUCuGGggguugaCCGgaGCcaGCu -3'
miRNA:   3'- -UCGCUGCUGCUAGuCC-------GGCgaCGa-CG- -5'
12376 3' -57.9 NC_003324.1 + 38436 0.67 0.502599
Target:  5'- -aCGACGGCGAcCAGcGCCGCcccGgUGCc -3'
miRNA:   3'- ucGCUGCUGCUaGUC-CGGCGa--CgACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.