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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12376 | 3' | -57.9 | NC_003324.1 | + | 39668 | 0.7 | 0.370515 |
Target: 5'- uGuCGAgGACGAUCcggAGGCUGgUGCUGa -3' miRNA: 3'- uC-GCUgCUGCUAG---UCCGGCgACGACg -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 40936 | 0.69 | 0.379143 |
Target: 5'- cGCGGgGGCaGAUCAGcaaucaCCGCUGCgagGCg -3' miRNA: 3'- uCGCUgCUG-CUAGUCc-----GGCGACGa--CG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 40966 | 0.69 | 0.424249 |
Target: 5'- cAGCGuuCGuugaaguCGAUCGGGCCGCaUGCg-- -3' miRNA: 3'- -UCGCu-GCu------GCUAGUCCGGCG-ACGacg -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 42742 | 0.67 | 0.502599 |
Target: 5'- uGGUGGCccGGCGAau-GGCCuuGCUGUUGCa -3' miRNA: 3'- -UCGCUG--CUGCUaguCCGG--CGACGACG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 44826 | 0.72 | 0.270878 |
Target: 5'- aGGgGGCGGCG-UCAuuGGCgugccCGCUGCUGCc -3' miRNA: 3'- -UCgCUGCUGCuAGU--CCG-----GCGACGACG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 47631 | 0.72 | 0.257614 |
Target: 5'- -aUGACGGCGAcCGGGCCGCcaucgucgaGCUGUg -3' miRNA: 3'- ucGCUGCUGCUaGUCCGGCGa--------CGACG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 48068 | 0.69 | 0.395902 |
Target: 5'- cGGCGAUGAuCGAUCGcuucaugaggaucGcGCCgacgugGCUGCUGCu -3' miRNA: 3'- -UCGCUGCU-GCUAGU-------------C-CGG------CGACGACG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 48168 | 0.71 | 0.299044 |
Target: 5'- cAGCGACGugGucccuAUC-GGCCGCguucGCUGg -3' miRNA: 3'- -UCGCUGCugC-----UAGuCCGGCGa---CGACg -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 51421 | 0.68 | 0.433648 |
Target: 5'- cGCGGCGAcCGGauUUGGGUgcgcgagaaCGCUGCUGUc -3' miRNA: 3'- uCGCUGCU-GCU--AGUCCG---------GCGACGACG- -5' |
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12376 | 3' | -57.9 | NC_003324.1 | + | 52658 | 0.7 | 0.362023 |
Target: 5'- gAGCGuCGGCGAUguugacggugaUAGGCUGUcucaugcuugUGCUGCc -3' miRNA: 3'- -UCGCuGCUGCUA-----------GUCCGGCG----------ACGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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