miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12376 5' -53.5 NC_003324.1 + 35087 1.11 0.000893
Target:  5'- gCUGCUGCUGCGGCAGCAAACGCAAACg -3'
miRNA:   3'- -GACGACGACGCCGUCGUUUGCGUUUG- -5'
12376 5' -53.5 NC_003324.1 + 1781 0.78 0.172038
Target:  5'- -aGCUGCUGCuGCAGCAcaaggacgaugaGACGCGAGa -3'
miRNA:   3'- gaCGACGACGcCGUCGU------------UUGCGUUUg -5'
12376 5' -53.5 NC_003324.1 + 50016 0.77 0.205571
Target:  5'- gUGCUGCUGaUcuugaaugcgaugggGGCAGCGAAgGCGAGCa -3'
miRNA:   3'- gACGACGAC-G---------------CCGUCGUUUgCGUUUG- -5'
12376 5' -53.5 NC_003324.1 + 30606 0.75 0.288124
Target:  5'- -aGCgGCaGCGGCAGCGAAggucgccacgguCGCAGGCg -3'
miRNA:   3'- gaCGaCGaCGCCGUCGUUU------------GCGUUUG- -5'
12376 5' -53.5 NC_003324.1 + 5630 0.74 0.295686
Target:  5'- -gGCgaagGUUGCGGCGGCAAcCGgGAACu -3'
miRNA:   3'- gaCGa---CGACGCCGUCGUUuGCgUUUG- -5'
12376 5' -53.5 NC_003324.1 + 47535 0.74 0.303402
Target:  5'- gCUGCUcaaGCUGCGGCAGUGccAugGUGGAUg -3'
miRNA:   3'- -GACGA---CGACGCCGUCGU--UugCGUUUG- -5'
12376 5' -53.5 NC_003324.1 + 57038 0.74 0.311271
Target:  5'- -gGCUggGgaGCGGCGGCGAggGCGCGGAUg -3'
miRNA:   3'- gaCGA--CgaCGCCGUCGUU--UGCGUUUG- -5'
12376 5' -53.5 NC_003324.1 + 133 0.73 0.344291
Target:  5'- -aGCgugGCUGCGGCAgGCAGACGgGu-- -3'
miRNA:   3'- gaCGa--CGACGCCGU-CGUUUGCgUuug -5'
12376 5' -53.5 NC_003324.1 + 26293 0.73 0.360835
Target:  5'- uUGCUGCUGCcG-AGCGaggggacGACGCAGACg -3'
miRNA:   3'- gACGACGACGcCgUCGU-------UUGCGUUUG- -5'
12376 5' -53.5 NC_003324.1 + 5325 0.72 0.407913
Target:  5'- -cGCUGgUGCGGCGGCcaacuGAUGCucGAACc -3'
miRNA:   3'- gaCGACgACGCCGUCGu----UUGCG--UUUG- -5'
12376 5' -53.5 NC_003324.1 + 32036 0.72 0.407913
Target:  5'- gCUGuCUGCcgGCGGCGGCucACGgcCGAGCa -3'
miRNA:   3'- -GAC-GACGa-CGCCGUCGuuUGC--GUUUG- -5'
12376 5' -53.5 NC_003324.1 + 35698 0.71 0.43734
Target:  5'- aUGaUGCUGCGcGCAGCAGAaGCcGACa -3'
miRNA:   3'- gACgACGACGC-CGUCGUUUgCGuUUG- -5'
12376 5' -53.5 NC_003324.1 + 14581 0.71 0.43734
Target:  5'- cCUGCcgGCgcaaGCGGcCGGCG-GCGCAGGCg -3'
miRNA:   3'- -GACGa-CGa---CGCC-GUCGUuUGCGUUUG- -5'
12376 5' -53.5 NC_003324.1 + 56649 0.71 0.447417
Target:  5'- -aGCgGCguuauggGCGGCGGCAuggguCGCGGGCa -3'
miRNA:   3'- gaCGaCGa------CGCCGUCGUuu---GCGUUUG- -5'
12376 5' -53.5 NC_003324.1 + 48717 0.71 0.457622
Target:  5'- aUGCcgaugaUGUUGCGGCGGagcCGGAUGCGGGCg -3'
miRNA:   3'- gACG------ACGACGCCGUC---GUUUGCGUUUG- -5'
12376 5' -53.5 NC_003324.1 + 42217 0.71 0.466911
Target:  5'- uCUGUUGCUgauccccGCGGCGGCAuuGGCGaCGAguGCg -3'
miRNA:   3'- -GACGACGA-------CGCCGUCGU--UUGC-GUU--UG- -5'
12376 5' -53.5 NC_003324.1 + 25529 0.7 0.51799
Target:  5'- aUGCUcgccaagugggucgGCUGgGGCGGCcuGCGCAAc- -3'
miRNA:   3'- gACGA--------------CGACgCCGUCGuuUGCGUUug -5'
12376 5' -53.5 NC_003324.1 + 33763 0.7 0.532214
Target:  5'- cCUGUgaUGCcuugGCGGCAGCGcaGGCGUaucGAGCg -3'
miRNA:   3'- -GACG--ACGa---CGCCGUCGU--UUGCG---UUUG- -5'
12376 5' -53.5 NC_003324.1 + 52420 0.69 0.55436
Target:  5'- gUGCUGCgUGCaauucGguGCAGAUGUAGACc -3'
miRNA:   3'- gACGACG-ACGc----CguCGUUUGCGUUUG- -5'
12376 5' -53.5 NC_003324.1 + 13169 0.69 0.565536
Target:  5'- -gGCUGCgucgGCGGCGGUcgGCGgcGGCg -3'
miRNA:   3'- gaCGACGa---CGCCGUCGuuUGCguUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.