miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12376 5' -53.5 NC_003324.1 + 12994 0.66 0.766595
Target:  5'- -cGCUGUUcGCGGCuGGCGAucUGCAGGg -3'
miRNA:   3'- gaCGACGA-CGCCG-UCGUUu-GCGUUUg -5'
12376 5' -53.5 NC_003324.1 + 30741 0.67 0.712471
Target:  5'- cCUGCUGCU-CGGgAGU-GACGgAAGCa -3'
miRNA:   3'- -GACGACGAcGCCgUCGuUUGCgUUUG- -5'
12376 5' -53.5 NC_003324.1 + 5938 0.67 0.723516
Target:  5'- -cGCUGCUGgcuaucaGGCAGCGAACuacccgcCGAAUg -3'
miRNA:   3'- gaCGACGACg------CCGUCGUUUGc------GUUUG- -5'
12376 5' -53.5 NC_003324.1 + 23539 0.67 0.723516
Target:  5'- gUGCcccacaGC-GUGGCGGCGGGCGCGcucGGCg -3'
miRNA:   3'- gACGa-----CGaCGCCGUCGUUUGCGU---UUG- -5'
12376 5' -53.5 NC_003324.1 + 11606 0.66 0.733373
Target:  5'- aCUGgUGC-GaCGGCAGCGAugaacguGCGCuuGAACg -3'
miRNA:   3'- -GACgACGaC-GCCGUCGUU-------UGCG--UUUG- -5'
12376 5' -53.5 NC_003324.1 + 55814 0.66 0.734463
Target:  5'- -gGCgUGCccucguggauuuUGCGGCAGCAgugacgGACGCAc-- -3'
miRNA:   3'- gaCG-ACG------------ACGCCGUCGU------UUGCGUuug -5'
12376 5' -53.5 NC_003324.1 + 29964 0.66 0.7453
Target:  5'- cCUGCguaGCgGCGGCAGCcgggucCGCAu-- -3'
miRNA:   3'- -GACGa--CGaCGCCGUCGuuu---GCGUuug -5'
12376 5' -53.5 NC_003324.1 + 49722 0.66 0.75495
Target:  5'- -cGCUGCccugcagGCGGgaugguuCAGCGGGCGCAc-- -3'
miRNA:   3'- gaCGACGa------CGCC-------GUCGUUUGCGUuug -5'
12376 5' -53.5 NC_003324.1 + 8185 0.66 0.756015
Target:  5'- cCUGCUcaCUGCccGGCGGCGcGCGCcuGGCa -3'
miRNA:   3'- -GACGAc-GACG--CCGUCGUuUGCGu-UUG- -5'
12376 5' -53.5 NC_003324.1 + 14377 0.67 0.701342
Target:  5'- -gGCUGCUGCcaaucaacGcGCcGCAAccgagcGCGCAAACg -3'
miRNA:   3'- gaCGACGACG--------C-CGuCGUU------UGCGUUUG- -5'
12376 5' -53.5 NC_003324.1 + 38008 0.67 0.690141
Target:  5'- -aGCgGUUGCGGC-GCAcggGGCGCGucAACa -3'
miRNA:   3'- gaCGaCGACGCCGuCGU---UUGCGU--UUG- -5'
12376 5' -53.5 NC_003324.1 + 35012 0.67 0.67888
Target:  5'- uUGCUGCcGCaGCAGCAgcAGCGgCGgcGGCa -3'
miRNA:   3'- gACGACGaCGcCGUCGU--UUGC-GU--UUG- -5'
12376 5' -53.5 NC_003324.1 + 47535 0.74 0.303402
Target:  5'- gCUGCUcaaGCUGCGGCAGUGccAugGUGGAUg -3'
miRNA:   3'- -GACGA---CGACGCCGUCGU--UugCGUUUG- -5'
12376 5' -53.5 NC_003324.1 + 32036 0.72 0.407913
Target:  5'- gCUGuCUGCcgGCGGCGGCucACGgcCGAGCa -3'
miRNA:   3'- -GAC-GACGa-CGCCGUCGuuUGC--GUUUG- -5'
12376 5' -53.5 NC_003324.1 + 14581 0.71 0.43734
Target:  5'- cCUGCcgGCgcaaGCGGcCGGCG-GCGCAGGCg -3'
miRNA:   3'- -GACGa-CGa---CGCC-GUCGUuUGCGUUUG- -5'
12376 5' -53.5 NC_003324.1 + 51545 0.69 0.565536
Target:  5'- -gGCUGCcgucuUGCGGCaacGGCGuuCGCAAGg -3'
miRNA:   3'- gaCGACG-----ACGCCG---UCGUuuGCGUUUg -5'
12376 5' -53.5 NC_003324.1 + 1022 0.69 0.57677
Target:  5'- -aGCUcGCUGaCGGCGGCGGGCuCAAu- -3'
miRNA:   3'- gaCGA-CGAC-GCCGUCGUUUGcGUUug -5'
12376 5' -53.5 NC_003324.1 + 19007 0.68 0.610727
Target:  5'- -gGCUGCacGCGGCuGGCcucGAACGCGAuGCg -3'
miRNA:   3'- gaCGACGa-CGCCG-UCG---UUUGCGUU-UG- -5'
12376 5' -53.5 NC_003324.1 + 44809 0.68 0.644861
Target:  5'- aUGCUGCUGCggggagaagggGGCGGCGucauuGGCGUg--- -3'
miRNA:   3'- gACGACGACG-----------CCGUCGU-----UUGCGuuug -5'
12376 5' -53.5 NC_003324.1 + 35329 0.68 0.656228
Target:  5'- -gGCUGCUGCGGUuGCuguUGCu-GCg -3'
miRNA:   3'- gaCGACGACGCCGuCGuuuGCGuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.