Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12376 | 5' | -53.5 | NC_003324.1 | + | 44809 | 0.68 | 0.644861 |
Target: 5'- aUGCUGCUGCggggagaagggGGCGGCGucauuGGCGUg--- -3' miRNA: 3'- gACGACGACG-----------CCGUCGU-----UUGCGuuug -5' |
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12376 | 5' | -53.5 | NC_003324.1 | + | 35329 | 0.68 | 0.656228 |
Target: 5'- -gGCUGCUGCGGUuGCuguUGCu-GCg -3' miRNA: 3'- gaCGACGACGCCGuCGuuuGCGuuUG- -5' |
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12376 | 5' | -53.5 | NC_003324.1 | + | 35012 | 0.67 | 0.67888 |
Target: 5'- uUGCUGCcGCaGCAGCAgcAGCGgCGgcGGCa -3' miRNA: 3'- gACGACGaCGcCGUCGU--UUGC-GU--UUG- -5' |
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12376 | 5' | -53.5 | NC_003324.1 | + | 21377 | 0.67 | 0.701342 |
Target: 5'- -cGCcgGCga-GGCGGCGAACGCGGc- -3' miRNA: 3'- gaCGa-CGacgCCGUCGUUUGCGUUug -5' |
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12376 | 5' | -53.5 | NC_003324.1 | + | 32492 | 0.67 | 0.701342 |
Target: 5'- gUGCUGgUGUGcGCGGUaaGAGCGCGc-- -3' miRNA: 3'- gACGACgACGC-CGUCG--UUUGCGUuug -5' |
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12376 | 5' | -53.5 | NC_003324.1 | + | 22292 | 0.67 | 0.690141 |
Target: 5'- -aGgUGC-GCGGCGGCAAGCcCAccAACa -3' miRNA: 3'- gaCgACGaCGCCGUCGUUUGcGU--UUG- -5' |
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12376 | 5' | -53.5 | NC_003324.1 | + | 40328 | 0.67 | 0.690141 |
Target: 5'- -cGCacGCaagGCGGCAGuCGAGCGgGAGCc -3' miRNA: 3'- gaCGa-CGa--CGCCGUC-GUUUGCgUUUG- -5' |
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12376 | 5' | -53.5 | NC_003324.1 | + | 55393 | 0.67 | 0.690141 |
Target: 5'- -aGCcGCUGUGGCAGCuuguuccaGCAGccGCg -3' miRNA: 3'- gaCGaCGACGCCGUCGuuug----CGUU--UG- -5' |
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12376 | 5' | -53.5 | NC_003324.1 | + | 8203 | 0.67 | 0.690141 |
Target: 5'- -aGCUGCccgGCGGgugaguuuCAGCAcaGGCGCAAcgGCg -3' miRNA: 3'- gaCGACGa--CGCC--------GUCGU--UUGCGUU--UG- -5' |
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12376 | 5' | -53.5 | NC_003324.1 | + | 6301 | 0.68 | 0.667572 |
Target: 5'- gCUGCUGCUGCGccuCGGCcuucAugGCuucGACg -3' miRNA: 3'- -GACGACGACGCc--GUCGu---UugCGu--UUG- -5' |
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12376 | 5' | -53.5 | NC_003324.1 | + | 33672 | 0.67 | 0.723516 |
Target: 5'- -cGC-GCUGCGcaaaGCAGCAGGgGCGAu- -3' miRNA: 3'- gaCGaCGACGC----CGUCGUUUgCGUUug -5' |
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12376 | 5' | -53.5 | NC_003324.1 | + | 52389 | 0.66 | 0.734463 |
Target: 5'- --cUUGCUGgGGUcGCAGACGCcGGCc -3' miRNA: 3'- gacGACGACgCCGuCGUUUGCGuUUG- -5' |
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12376 | 5' | -53.5 | NC_003324.1 | + | 54881 | 0.66 | 0.734463 |
Target: 5'- -cGCgaacgGC-GCGGCGGUcugcGAUGCGAGCg -3' miRNA: 3'- gaCGa----CGaCGCCGUCGu---UUGCGUUUG- -5' |
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12376 | 5' | -53.5 | NC_003324.1 | + | 28933 | 0.66 | 0.734463 |
Target: 5'- --aCUGCUcCGGCucGCAAGCGCGuGCu -3' miRNA: 3'- gacGACGAcGCCGu-CGUUUGCGUuUG- -5' |
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12376 | 5' | -53.5 | NC_003324.1 | + | 57392 | 0.66 | 0.7453 |
Target: 5'- aCUGCUGgaG-GGCucGGCGGAgGCGAGg -3' miRNA: 3'- -GACGACgaCgCCG--UCGUUUgCGUUUg -5' |
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12376 | 5' | -53.5 | NC_003324.1 | + | 37517 | 0.66 | 0.7453 |
Target: 5'- -cGC-GCUGUGcGCGGCAAuGCGCucgauAGCa -3' miRNA: 3'- gaCGaCGACGC-CGUCGUU-UGCGu----UUG- -5' |
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12376 | 5' | -53.5 | NC_003324.1 | + | 33909 | 0.66 | 0.7453 |
Target: 5'- uUGCcGCgagGCGGCcguGCAAGcCGCAAu- -3' miRNA: 3'- gACGaCGa--CGCCGu--CGUUU-GCGUUug -5' |
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12376 | 5' | -53.5 | NC_003324.1 | + | 12502 | 0.66 | 0.752814 |
Target: 5'- gCUGCUGUUGCuGCAuCGAAUcgggaugggugccgGCGAGCa -3' miRNA: 3'- -GACGACGACGcCGUcGUUUG--------------CGUUUG- -5' |
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12376 | 5' | -53.5 | NC_003324.1 | + | 1742 | 0.66 | 0.766595 |
Target: 5'- -cGCcGUcaGCGuCAGCAGGCGCAGGCc -3' miRNA: 3'- gaCGaCGa-CGCcGUCGUUUGCGUUUG- -5' |
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12376 | 5' | -53.5 | NC_003324.1 | + | 35087 | 1.11 | 0.000893 |
Target: 5'- gCUGCUGCUGCGGCAGCAAACGCAAACg -3' miRNA: 3'- -GACGACGACGCCGUCGUUUGCGUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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