miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12376 5' -53.5 NC_003324.1 + 23539 0.67 0.723516
Target:  5'- gUGCcccacaGC-GUGGCGGCGGGCGCGcucGGCg -3'
miRNA:   3'- gACGa-----CGaCGCCGUCGUUUGCGU---UUG- -5'
12376 5' -53.5 NC_003324.1 + 25529 0.7 0.51799
Target:  5'- aUGCUcgccaagugggucgGCUGgGGCGGCcuGCGCAAc- -3'
miRNA:   3'- gACGA--------------CGACgCCGUCGuuUGCGUUug -5'
12376 5' -53.5 NC_003324.1 + 26293 0.73 0.360835
Target:  5'- uUGCUGCUGCcG-AGCGaggggacGACGCAGACg -3'
miRNA:   3'- gACGACGACGcCgUCGU-------UUGCGUUUG- -5'
12376 5' -53.5 NC_003324.1 + 28933 0.66 0.734463
Target:  5'- --aCUGCUcCGGCucGCAAGCGCGuGCu -3'
miRNA:   3'- gacGACGAcGCCGu-CGUUUGCGUuUG- -5'
12376 5' -53.5 NC_003324.1 + 29964 0.66 0.7453
Target:  5'- cCUGCguaGCgGCGGCAGCcgggucCGCAu-- -3'
miRNA:   3'- -GACGa--CGaCGCCGUCGuuu---GCGUuug -5'
12376 5' -53.5 NC_003324.1 + 30606 0.75 0.288124
Target:  5'- -aGCgGCaGCGGCAGCGAAggucgccacgguCGCAGGCg -3'
miRNA:   3'- gaCGaCGaCGCCGUCGUUU------------GCGUUUG- -5'
12376 5' -53.5 NC_003324.1 + 30741 0.67 0.712471
Target:  5'- cCUGCUGCU-CGGgAGU-GACGgAAGCa -3'
miRNA:   3'- -GACGACGAcGCCgUCGuUUGCgUUUG- -5'
12376 5' -53.5 NC_003324.1 + 32036 0.72 0.407913
Target:  5'- gCUGuCUGCcgGCGGCGGCucACGgcCGAGCa -3'
miRNA:   3'- -GAC-GACGa-CGCCGUCGuuUGC--GUUUG- -5'
12376 5' -53.5 NC_003324.1 + 32492 0.67 0.701342
Target:  5'- gUGCUGgUGUGcGCGGUaaGAGCGCGc-- -3'
miRNA:   3'- gACGACgACGC-CGUCG--UUUGCGUuug -5'
12376 5' -53.5 NC_003324.1 + 33596 0.66 0.766595
Target:  5'- cCUGCUGCUuuGcGCAGCGcguUGCcGACg -3'
miRNA:   3'- -GACGACGAcgC-CGUCGUuu-GCGuUUG- -5'
12376 5' -53.5 NC_003324.1 + 33672 0.67 0.723516
Target:  5'- -cGC-GCUGCGcaaaGCAGCAGGgGCGAu- -3'
miRNA:   3'- gaCGaCGACGC----CGUCGUUUgCGUUug -5'
12376 5' -53.5 NC_003324.1 + 33763 0.7 0.532214
Target:  5'- cCUGUgaUGCcuugGCGGCAGCGcaGGCGUaucGAGCg -3'
miRNA:   3'- -GACG--ACGa---CGCCGUCGU--UUGCG---UUUG- -5'
12376 5' -53.5 NC_003324.1 + 33909 0.66 0.7453
Target:  5'- uUGCcGCgagGCGGCcguGCAAGcCGCAAu- -3'
miRNA:   3'- gACGaCGa--CGCCGu--CGUUU-GCGUUug -5'
12376 5' -53.5 NC_003324.1 + 35012 0.67 0.67888
Target:  5'- uUGCUGCcGCaGCAGCAgcAGCGgCGgcGGCa -3'
miRNA:   3'- gACGACGaCGcCGUCGU--UUGC-GU--UUG- -5'
12376 5' -53.5 NC_003324.1 + 35087 1.11 0.000893
Target:  5'- gCUGCUGCUGCGGCAGCAAACGCAAACg -3'
miRNA:   3'- -GACGACGACGCCGUCGUUUGCGUUUG- -5'
12376 5' -53.5 NC_003324.1 + 35329 0.68 0.656228
Target:  5'- -gGCUGCUGCGGUuGCuguUGCu-GCg -3'
miRNA:   3'- gaCGACGACGCCGuCGuuuGCGuuUG- -5'
12376 5' -53.5 NC_003324.1 + 35698 0.71 0.43734
Target:  5'- aUGaUGCUGCGcGCAGCAGAaGCcGACa -3'
miRNA:   3'- gACgACGACGC-CGUCGUUUgCGuUUG- -5'
12376 5' -53.5 NC_003324.1 + 37517 0.66 0.7453
Target:  5'- -cGC-GCUGUGcGCGGCAAuGCGCucgauAGCa -3'
miRNA:   3'- gaCGaCGACGC-CGUCGUU-UGCGu----UUG- -5'
12376 5' -53.5 NC_003324.1 + 38008 0.67 0.690141
Target:  5'- -aGCgGUUGCGGC-GCAcggGGCGCGucAACa -3'
miRNA:   3'- gaCGaCGACGCCGuCGU---UUGCGU--UUG- -5'
12376 5' -53.5 NC_003324.1 + 40328 0.67 0.690141
Target:  5'- -cGCacGCaagGCGGCAGuCGAGCGgGAGCc -3'
miRNA:   3'- gaCGa-CGa--CGCCGUC-GUUUGCgUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.