Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12377 | 3' | -59.5 | NC_003324.1 | + | 35033 | 0.69 | 0.34674 |
Target: 5'- cGGCgGCGGCAGCAgcGGCCuGAUCGu- -3' miRNA: 3'- -CCGaCGUCGUCGUguCCGG-CUGGUcc -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 29971 | 0.68 | 0.354917 |
Target: 5'- aGCgGCGGCAGC-CGGGuccgcaucgaucCCGGCCGGu -3' miRNA: 3'- cCGaCGUCGUCGuGUCC------------GGCUGGUCc -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 32042 | 0.68 | 0.380255 |
Target: 5'- uGCcgGCGGCGGCuCAcGGCCGAgCaAGGc -3' miRNA: 3'- cCGa-CGUCGUCGuGU-CCGGCUgG-UCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 5625 | 0.68 | 0.388965 |
Target: 5'- aGGUUGCGGCGGCAacCGGgaacuugauGCCGAUCGa- -3' miRNA: 3'- -CCGACGUCGUCGU--GUC---------CGGCUGGUcc -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 49570 | 0.67 | 0.415868 |
Target: 5'- gGGUUGaagaaCGGCAccgucGUugAGGCUGACCAGa -3' miRNA: 3'- -CCGAC-----GUCGU-----CGugUCCGGCUGGUCc -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 1735 | 0.67 | 0.415868 |
Target: 5'- aGC-GuCAGCAgGCGCAGGCCGAguuucgugaCGGGa -3' miRNA: 3'- cCGaC-GUCGU-CGUGUCCGGCUg--------GUCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 35694 | 0.67 | 0.415868 |
Target: 5'- uGCUGCGcGCAGCAgAaGCCGACaucggcaagaAGGa -3' miRNA: 3'- cCGACGU-CGUCGUgUcCGGCUGg---------UCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 19226 | 0.67 | 0.425085 |
Target: 5'- cGCUcCAGaagaucaaGGaCGCGGGCCuGACCGGGa -3' miRNA: 3'- cCGAcGUCg-------UC-GUGUCCGG-CUGGUCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 33756 | 0.67 | 0.425085 |
Target: 5'- uGCcuugGCGGCAGCGCAGGCguauCGAgCguagaAGGg -3' miRNA: 3'- cCGa---CGUCGUCGUGUCCG----GCUgG-----UCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 39064 | 0.67 | 0.434423 |
Target: 5'- cGCUGCGGCuGCGCAGGgcaUGAUCu-- -3' miRNA: 3'- cCGACGUCGuCGUGUCCg--GCUGGucc -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 32388 | 0.67 | 0.434423 |
Target: 5'- cGGagaUGCGGCGccgcGCAgAGGCCGuugucGCCAGc -3' miRNA: 3'- -CCg--ACGUCGU----CGUgUCCGGC-----UGGUCc -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 5981 | 0.67 | 0.434423 |
Target: 5'- -aCUGUcgGGCcaucaaGGCGCAGGCCGucauccccaagGCCGGGu -3' miRNA: 3'- ccGACG--UCG------UCGUGUCCGGC-----------UGGUCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 24580 | 0.67 | 0.434423 |
Target: 5'- cGCUGCGGgcgacCAGCGCAGGaUC-AUCGGGg -3' miRNA: 3'- cCGACGUC-----GUCGUGUCC-GGcUGGUCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 44401 | 0.67 | 0.434423 |
Target: 5'- uGGCUGCAGaGGCuAUcGGCCGcGCCAc- -3' miRNA: 3'- -CCGACGUCgUCG-UGuCCGGC-UGGUcc -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 42650 | 0.67 | 0.443879 |
Target: 5'- cGGauCUGCAaCAGCAaggccauucgcCGGGCC-ACCAGGa -3' miRNA: 3'- -CC--GACGUcGUCGU-----------GUCCGGcUGGUCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 25684 | 0.66 | 0.463131 |
Target: 5'- cGGC-GCAGCAGC---GGCCGA-CAGa -3' miRNA: 3'- -CCGaCGUCGUCGuguCCGGCUgGUCc -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 31315 | 0.66 | 0.47292 |
Target: 5'- cGGC--CGGCGGCGCuGGcGCUGGCgGGGg -3' miRNA: 3'- -CCGacGUCGUCGUG-UC-CGGCUGgUCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 19614 | 0.66 | 0.47292 |
Target: 5'- uGGUuuUG-AGCAGCGCGGGCUG--CAGGu -3' miRNA: 3'- -CCG--ACgUCGUCGUGUCCGGCugGUCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 44310 | 0.66 | 0.47292 |
Target: 5'- gGGC-GCGGUGGCGC-GGCCGAUa--- -3' miRNA: 3'- -CCGaCGUCGUCGUGuCCGGCUGgucc -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 8432 | 0.66 | 0.47292 |
Target: 5'- cGGCUGCAGguGC--AGGCgGAUUugcGGc -3' miRNA: 3'- -CCGACGUCguCGugUCCGgCUGGu--CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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