miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12377 3' -59.5 NC_003324.1 + 35449 1.11 0.000266
Target:  5'- aGGCUGCAGCAGCACAGGCCGACCAGGc -3'
miRNA:   3'- -CCGACGUCGUCGUGUCCGGCUGGUCC- -5'
12377 3' -59.5 NC_003324.1 + 14347 0.78 0.079832
Target:  5'- aGCUGCAGaAGCGCGGGCCGACg--- -3'
miRNA:   3'- cCGACGUCgUCGUGUCCGGCUGgucc -5'
12377 3' -59.5 NC_003324.1 + 54063 0.77 0.091768
Target:  5'- cGCUGCGGCGGaAUcGGCCGACCGGc -3'
miRNA:   3'- cCGACGUCGUCgUGuCCGGCUGGUCc -5'
12377 3' -59.5 NC_003324.1 + 16137 0.76 0.105385
Target:  5'- cGCUuCGGUAGCGgGGGCCGcGCCAGGc -3'
miRNA:   3'- cCGAcGUCGUCGUgUCCGGC-UGGUCC- -5'
12377 3' -59.5 NC_003324.1 + 1852 0.75 0.120884
Target:  5'- uGCUGCAGCAGCAgcuucauuCuGG-CGGCCGGGa -3'
miRNA:   3'- cCGACGUCGUCGU--------GuCCgGCUGGUCC- -5'
12377 3' -59.5 NC_003324.1 + 49419 0.75 0.120884
Target:  5'- cGGCgagcccgGCAGCGGCGCuuGGCUGAUCuGGc -3'
miRNA:   3'- -CCGa------CGUCGUCGUGu-CCGGCUGGuCC- -5'
12377 3' -59.5 NC_003324.1 + 47543 0.74 0.143814
Target:  5'- aGCUGCGGCAGUGCcaugguggaugacgaGGGCCGAUCGa- -3'
miRNA:   3'- cCGACGUCGUCGUG---------------UCCGGCUGGUcc -5'
12377 3' -59.5 NC_003324.1 + 28980 0.73 0.180872
Target:  5'- cGGUcGCAGCgaAGgACgAGGCCGGCCAGu -3'
miRNA:   3'- -CCGaCGUCG--UCgUG-UCCGGCUGGUCc -5'
12377 3' -59.5 NC_003324.1 + 39796 0.72 0.200839
Target:  5'- uGGCUGCAGaacCGCAGGCCGGgCAc- -3'
miRNA:   3'- -CCGACGUCgucGUGUCCGGCUgGUcc -5'
12377 3' -59.5 NC_003324.1 + 30604 0.72 0.206122
Target:  5'- cGGCaGCGGCAGCGaAGGUCG-CCAcGGu -3'
miRNA:   3'- -CCGaCGUCGUCGUgUCCGGCuGGU-CC- -5'
12377 3' -59.5 NC_003324.1 + 14586 0.72 0.217049
Target:  5'- cGGCgcaagcgGcCGGCGGCGCAGGCgguagcguggCGGCCGGa -3'
miRNA:   3'- -CCGa------C-GUCGUCGUGUCCG----------GCUGGUCc -5'
12377 3' -59.5 NC_003324.1 + 35082 0.72 0.222126
Target:  5'- uGCUGCGGCAGCaaacgcaaacgcuGCAGGCUcggacaccacaGACaCGGGc -3'
miRNA:   3'- cCGACGUCGUCG-------------UGUCCGG-----------CUG-GUCC- -5'
12377 3' -59.5 NC_003324.1 + 44926 0.71 0.246545
Target:  5'- aGGCUGCccacGGCAGCAgCGGGCaCG-CCAa- -3'
miRNA:   3'- -CCGACG----UCGUCGU-GUCCG-GCuGGUcc -5'
12377 3' -59.5 NC_003324.1 + 42956 0.7 0.272471
Target:  5'- cGGUcGCAGauccuCGCGGGCCGGCCGGc -3'
miRNA:   3'- -CCGaCGUCguc--GUGUCCGGCUGGUCc -5'
12377 3' -59.5 NC_003324.1 + 29720 0.7 0.279286
Target:  5'- cGGCUcagGCGGCGGCguugcgccagaaGCAGGCagagccuccCGugCAGGa -3'
miRNA:   3'- -CCGA---CGUCGUCG------------UGUCCG---------GCugGUCC- -5'
12377 3' -59.5 NC_003324.1 + 56647 0.7 0.300542
Target:  5'- cGGCguuauggGCGGCGGCAUGGGUCG--CGGGc -3'
miRNA:   3'- -CCGa------CGUCGUCGUGUCCGGCugGUCC- -5'
12377 3' -59.5 NC_003324.1 + 31237 0.69 0.330794
Target:  5'- aGGCcggGCAGCuccGCgagGCAGGCCugcagcGCCAGGc -3'
miRNA:   3'- -CCGa--CGUCGu--CG---UGUCCGGc-----UGGUCC- -5'
12377 3' -59.5 NC_003324.1 + 1784 0.69 0.330794
Target:  5'- uGCUGCuGCAGCACAaGGaCGAUgAGa -3'
miRNA:   3'- cCGACGuCGUCGUGU-CCgGCUGgUCc -5'
12377 3' -59.5 NC_003324.1 + 6230 0.69 0.338699
Target:  5'- aGGCgcaGCAGCAGCGCAG-CaagcGCCAGa -3'
miRNA:   3'- -CCGa--CGUCGUCGUGUCcGgc--UGGUCc -5'
12377 3' -59.5 NC_003324.1 + 35033 0.69 0.34674
Target:  5'- cGGCgGCGGCAGCAgcGGCCuGAUCGu- -3'
miRNA:   3'- -CCGaCGUCGUCGUguCCGG-CUGGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.