miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12377 3' -59.5 NC_003324.1 + 129 0.66 0.476865
Target:  5'- uGGCUGCGGCAgGCagACGGGUcauacuucugCGAgguugggacugagcaCCAGGu -3'
miRNA:   3'- -CCGACGUCGU-CG--UGUCCG----------GCU---------------GGUCC- -5'
12377 3' -59.5 NC_003324.1 + 1735 0.67 0.415868
Target:  5'- aGC-GuCAGCAgGCGCAGGCCGAguuucgugaCGGGa -3'
miRNA:   3'- cCGaC-GUCGU-CGUGUCCGGCUg--------GUCC- -5'
12377 3' -59.5 NC_003324.1 + 1784 0.69 0.330794
Target:  5'- uGCUGCuGCAGCACAaGGaCGAUgAGa -3'
miRNA:   3'- cCGACGuCGUCGUGU-CCgGCUGgUCc -5'
12377 3' -59.5 NC_003324.1 + 1852 0.75 0.120884
Target:  5'- uGCUGCAGCAGCAgcuucauuCuGG-CGGCCGGGa -3'
miRNA:   3'- cCGACGUCGUCGU--------GuCCgGCUGGUCC- -5'
12377 3' -59.5 NC_003324.1 + 5625 0.68 0.388965
Target:  5'- aGGUUGCGGCGGCAacCGGgaacuugauGCCGAUCGa- -3'
miRNA:   3'- -CCGACGUCGUCGU--GUC---------CGGCUGGUcc -5'
12377 3' -59.5 NC_003324.1 + 5981 0.67 0.434423
Target:  5'- -aCUGUcgGGCcaucaaGGCGCAGGCCGucauccccaagGCCGGGu -3'
miRNA:   3'- ccGACG--UCG------UCGUGUCCGGC-----------UGGUCC- -5'
12377 3' -59.5 NC_003324.1 + 6230 0.69 0.338699
Target:  5'- aGGCgcaGCAGCAGCGCAG-CaagcGCCAGa -3'
miRNA:   3'- -CCGa--CGUCGUCGUGUCcGgc--UGGUCc -5'
12377 3' -59.5 NC_003324.1 + 8203 0.66 0.491799
Target:  5'- aGCUGCccGGCgggugaguuucAGCACAGGCgcaacggCGACCGuGGc -3'
miRNA:   3'- cCGACG--UCG-----------UCGUGUCCG-------GCUGGU-CC- -5'
12377 3' -59.5 NC_003324.1 + 8432 0.66 0.47292
Target:  5'- cGGCUGCAGguGC--AGGCgGAUUugcGGc -3'
miRNA:   3'- -CCGACGUCguCGugUCCGgCUGGu--CC- -5'
12377 3' -59.5 NC_003324.1 + 13401 0.66 0.47292
Target:  5'- uGCUGCAGCucGGCcagauACAGG-CGACUgAGGu -3'
miRNA:   3'- cCGACGUCG--UCG-----UGUCCgGCUGG-UCC- -5'
12377 3' -59.5 NC_003324.1 + 13605 0.66 0.502887
Target:  5'- cGGCUGCAaauuccGCGaagacGCGCAGGC-GAUCGGc -3'
miRNA:   3'- -CCGACGU------CGU-----CGUGUCCGgCUGGUCc -5'
12377 3' -59.5 NC_003324.1 + 14347 0.78 0.079832
Target:  5'- aGCUGCAGaAGCGCGGGCCGACg--- -3'
miRNA:   3'- cCGACGUCgUCGUGUCCGGCUGgucc -5'
12377 3' -59.5 NC_003324.1 + 14586 0.72 0.217049
Target:  5'- cGGCgcaagcgGcCGGCGGCGCAGGCgguagcguggCGGCCGGa -3'
miRNA:   3'- -CCGa------C-GUCGUCGUGUCCG----------GCUGGUCc -5'
12377 3' -59.5 NC_003324.1 + 15456 0.66 0.513061
Target:  5'- aGGUUGcCAGgGGCG-AGGCCaaGGCCgAGGa -3'
miRNA:   3'- -CCGAC-GUCgUCGUgUCCGG--CUGG-UCC- -5'
12377 3' -59.5 NC_003324.1 + 16137 0.76 0.105385
Target:  5'- cGCUuCGGUAGCGgGGGCCGcGCCAGGc -3'
miRNA:   3'- cCGAcGUCGUCGUgUCCGGC-UGGUCC- -5'
12377 3' -59.5 NC_003324.1 + 19226 0.67 0.425085
Target:  5'- cGCUcCAGaagaucaaGGaCGCGGGCCuGACCGGGa -3'
miRNA:   3'- cCGAcGUCg-------UC-GUGUCCGG-CUGGUCC- -5'
12377 3' -59.5 NC_003324.1 + 19614 0.66 0.47292
Target:  5'- uGGUuuUG-AGCAGCGCGGGCUG--CAGGu -3'
miRNA:   3'- -CCG--ACgUCGUCGUGUCCGGCugGUCC- -5'
12377 3' -59.5 NC_003324.1 + 24580 0.67 0.434423
Target:  5'- cGCUGCGGgcgacCAGCGCAGGaUC-AUCGGGg -3'
miRNA:   3'- cCGACGUC-----GUCGUGUCC-GGcUGGUCC- -5'
12377 3' -59.5 NC_003324.1 + 25684 0.66 0.463131
Target:  5'- cGGC-GCAGCAGC---GGCCGA-CAGa -3'
miRNA:   3'- -CCGaCGUCGUCGuguCCGGCUgGUCc -5'
12377 3' -59.5 NC_003324.1 + 26457 0.66 0.492803
Target:  5'- -aCUGgaAGCAGCACcuGCCGAaCAGGu -3'
miRNA:   3'- ccGACg-UCGUCGUGucCGGCUgGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.