Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12377 | 3' | -59.5 | NC_003324.1 | + | 28980 | 0.73 | 0.180872 |
Target: 5'- cGGUcGCAGCgaAGgACgAGGCCGGCCAGu -3' miRNA: 3'- -CCGaCGUCG--UCgUG-UCCGGCUGGUCc -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 29720 | 0.7 | 0.279286 |
Target: 5'- cGGCUcagGCGGCGGCguugcgccagaaGCAGGCagagccuccCGugCAGGa -3' miRNA: 3'- -CCGA---CGUCGUCG------------UGUCCG---------GCugGUCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 29971 | 0.68 | 0.354917 |
Target: 5'- aGCgGCGGCAGC-CGGGuccgcaucgaucCCGGCCGGu -3' miRNA: 3'- cCGaCGUCGUCGuGUCC------------GGCUGGUCc -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 30124 | 0.69 | 0.34674 |
Target: 5'- cGGCgugauggGCGGCGGCAUGGGUgGugUuGGu -3' miRNA: 3'- -CCGa------CGUCGUCGUGUCCGgCugGuCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 30604 | 0.72 | 0.206122 |
Target: 5'- cGGCaGCGGCAGCGaAGGUCG-CCAcGGu -3' miRNA: 3'- -CCGaCGUCGUCGUgUCCGGCuGGU-CC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 31237 | 0.69 | 0.330794 |
Target: 5'- aGGCcggGCAGCuccGCgagGCAGGCCugcagcGCCAGGc -3' miRNA: 3'- -CCGa--CGUCGu--CG---UGUCCGGc-----UGGUCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 31315 | 0.66 | 0.47292 |
Target: 5'- cGGC--CGGCGGCGCuGGcGCUGGCgGGGg -3' miRNA: 3'- -CCGacGUCGUCGUG-UC-CGGCUGgUCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 32042 | 0.68 | 0.380255 |
Target: 5'- uGCcgGCGGCGGCuCAcGGCCGAgCaAGGc -3' miRNA: 3'- cCGa-CGUCGUCGuGU-CCGGCUgG-UCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 32388 | 0.67 | 0.434423 |
Target: 5'- cGGagaUGCGGCGccgcGCAgAGGCCGuugucGCCAGc -3' miRNA: 3'- -CCg--ACGUCGU----CGUgUCCGGC-----UGGUCc -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 33756 | 0.67 | 0.425085 |
Target: 5'- uGCcuugGCGGCAGCGCAGGCguauCGAgCguagaAGGg -3' miRNA: 3'- cCGa---CGUCGUCGUGUCCG----GCUgG-----UCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 35033 | 0.69 | 0.34674 |
Target: 5'- cGGCgGCGGCAGCAgcGGCCuGAUCGu- -3' miRNA: 3'- -CCGaCGUCGUCGUguCCGG-CUGGUcc -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 35082 | 0.72 | 0.222126 |
Target: 5'- uGCUGCGGCAGCaaacgcaaacgcuGCAGGCUcggacaccacaGACaCGGGc -3' miRNA: 3'- cCGACGUCGUCG-------------UGUCCGG-----------CUG-GUCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 35449 | 1.11 | 0.000266 |
Target: 5'- aGGCUGCAGCAGCACAGGCCGACCAGGc -3' miRNA: 3'- -CCGACGUCGUCGUGUCCGGCUGGUCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 35694 | 0.67 | 0.415868 |
Target: 5'- uGCUGCGcGCAGCAgAaGCCGACaucggcaagaAGGa -3' miRNA: 3'- cCGACGU-CGUCGUgUcCGGCUGg---------UCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 38010 | 0.66 | 0.513061 |
Target: 5'- cGGUUGCGGC-GCACGGGgCGcgucaacauuccGCCGa- -3' miRNA: 3'- -CCGACGUCGuCGUGUCCgGC------------UGGUcc -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 39064 | 0.67 | 0.434423 |
Target: 5'- cGCUGCGGCuGCGCAGGgcaUGAUCu-- -3' miRNA: 3'- cCGACGUCGuCGUGUCCg--GCUGGucc -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 39796 | 0.72 | 0.200839 |
Target: 5'- uGGCUGCAGaacCGCAGGCCGGgCAc- -3' miRNA: 3'- -CCGACGUCgucGUGUCCGGCUgGUcc -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 41550 | 0.66 | 0.513061 |
Target: 5'- cGCUaacGaCAGCGGCGCGGGCCuGuuccuCgCAGGu -3' miRNA: 3'- cCGA---C-GUCGUCGUGUCCGG-Cu----G-GUCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 42650 | 0.67 | 0.443879 |
Target: 5'- cGGauCUGCAaCAGCAaggccauucgcCGGGCC-ACCAGGa -3' miRNA: 3'- -CC--GACGUcGUCGU-----------GUCCGGcUGGUCC- -5' |
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12377 | 3' | -59.5 | NC_003324.1 | + | 42956 | 0.7 | 0.272471 |
Target: 5'- cGGUcGCAGauccuCGCGGGCCGGCCGGc -3' miRNA: 3'- -CCGaCGUCguc--GUGUCCGGCUGGUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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