miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12377 5' -56.1 NC_003324.1 + 27465 0.68 0.487831
Target:  5'- gAACCuCAGCGcaggccuguagACGGCAcgaaguACCGCAGCGa -3'
miRNA:   3'- -UUGGcGUCGU-----------UGUCGU------UGGCGUCGUc -5'
12377 5' -56.1 NC_003324.1 + 53504 0.68 0.467165
Target:  5'- uAACCGCAGU---AGUucgAGCCGUAGUAGg -3'
miRNA:   3'- -UUGGCGUCGuugUCG---UUGGCGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 25693 0.68 0.457003
Target:  5'- cAGCCGUGccggcGCAGCAGCGGCCGaCAGa-- -3'
miRNA:   3'- -UUGGCGU-----CGUUGUCGUUGGC-GUCguc -5'
12377 5' -56.1 NC_003324.1 + 53020 0.68 0.457003
Target:  5'- uACCGgAGCAACuguuuccagccaGGCGACgaUGCGGCGGa -3'
miRNA:   3'- uUGGCgUCGUUG------------UCGUUG--GCGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 18986 0.68 0.457003
Target:  5'- cGACCG-AGCGggaaauACGGCGGCUGCAcGCGGc -3'
miRNA:   3'- -UUGGCgUCGU------UGUCGUUGGCGU-CGUC- -5'
12377 5' -56.1 NC_003324.1 + 14496 0.69 0.446961
Target:  5'- aAGCCGguGCAGC--CAACacugCGCGGCAGg -3'
miRNA:   3'- -UUGGCguCGUUGucGUUG----GCGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 1742 0.69 0.437042
Target:  5'- cGCCGuCAGCGuCAGCAGgCGCAGg-- -3'
miRNA:   3'- uUGGC-GUCGUuGUCGUUgGCGUCguc -5'
12377 5' -56.1 NC_003324.1 + 23531 0.69 0.417592
Target:  5'- cGACCGCacgAGCGACGGCAagACUGUGGUc- -3'
miRNA:   3'- -UUGGCG---UCGUUGUCGU--UGGCGUCGuc -5'
12377 5' -56.1 NC_003324.1 + 29967 0.69 0.417592
Target:  5'- --gCGUAGCGGCGGCAGCCGgGuccGCAu -3'
miRNA:   3'- uugGCGUCGUUGUCGUUGGCgU---CGUc -5'
12377 5' -56.1 NC_003324.1 + 53921 0.69 0.417592
Target:  5'- --gCGCGGCAAguGCGcuucGCCGCcuGCAGa -3'
miRNA:   3'- uugGCGUCGUUguCGU----UGGCGu-CGUC- -5'
12377 5' -56.1 NC_003324.1 + 1852 0.69 0.408067
Target:  5'- uGCUGCAGCAGCAGCuuCauucugGCGGcCGGg -3'
miRNA:   3'- uUGGCGUCGUUGUCGuuGg-----CGUC-GUC- -5'
12377 5' -56.1 NC_003324.1 + 30063 0.69 0.408067
Target:  5'- cGCCGCcggucGCGACAcCGGCCGCuGCGGc -3'
miRNA:   3'- uUGGCGu----CGUUGUcGUUGGCGuCGUC- -5'
12377 5' -56.1 NC_003324.1 + 50783 0.7 0.38943
Target:  5'- -gUCGaCGGCGACGGCAaugcugccacACCGgAGCAGu -3'
miRNA:   3'- uuGGC-GUCGUUGUCGU----------UGGCgUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 11652 0.7 0.380323
Target:  5'- gAGCCGCGGgAGCAGCAucgGCUGCucgcccGCAa -3'
miRNA:   3'- -UUGGCGUCgUUGUCGU---UGGCGu-----CGUc -5'
12377 5' -56.1 NC_003324.1 + 31215 0.7 0.374928
Target:  5'- aGGCCuGCAGCGccaggcgcaagaacaAgCAGCAGCCgaGCAGCAGc -3'
miRNA:   3'- -UUGG-CGUCGU---------------U-GUCGUUGG--CGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 24208 0.7 0.362541
Target:  5'- uGGCCGCAGau-CAGCGcGCUGgAGCAGa -3'
miRNA:   3'- -UUGGCGUCguuGUCGU-UGGCgUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 40332 0.7 0.362541
Target:  5'- gGACCGCAcGCAagGCGGCAGUCG-AGCGGg -3'
miRNA:   3'- -UUGGCGU-CGU--UGUCGUUGGCgUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 11441 0.71 0.348736
Target:  5'- -uCUGCGGCAAacugauugacaacauCAGCGACCGCGucGCGGu -3'
miRNA:   3'- uuGGCGUCGUU---------------GUCGUUGGCGU--CGUC- -5'
12377 5' -56.1 NC_003324.1 + 8222 0.71 0.345345
Target:  5'- uGAUCGCAGUcgAGCGcGCAGCUGCccGGCGGg -3'
miRNA:   3'- -UUGGCGUCG--UUGU-CGUUGGCG--UCGUC- -5'
12377 5' -56.1 NC_003324.1 + 35468 0.71 0.345345
Target:  5'- cAugCGCgGGCGGCcgAGCAgGCUGCAGCAGc -3'
miRNA:   3'- -UugGCG-UCGUUG--UCGU-UGGCGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.