miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12377 5' -56.1 NC_003324.1 + 36525 0.67 0.574202
Target:  5'- cGCCGCGggcGCGACGGCAugCccuaCGGCAu -3'
miRNA:   3'- uUGGCGU---CGUUGUCGUugGc---GUCGUc -5'
12377 5' -56.1 NC_003324.1 + 26256 0.67 0.563152
Target:  5'- -cCCGCAGCGagaccgccgACAGaaugaugcaGGCCGcCAGCAGc -3'
miRNA:   3'- uuGGCGUCGU---------UGUCg--------UUGGC-GUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 30519 0.67 0.552158
Target:  5'- cGACCGUGGCGACcuucGCuGCCGCuGCc- -3'
miRNA:   3'- -UUGGCGUCGUUGu---CGuUGGCGuCGuc -5'
12377 5' -56.1 NC_003324.1 + 52352 0.67 0.551062
Target:  5'- uGCaCGCAGCAcucuucuucgccuGCAuGCAuccgucugGCCGCGGCAa -3'
miRNA:   3'- uUG-GCGUCGU-------------UGU-CGU--------UGGCGUCGUc -5'
12377 5' -56.1 NC_003324.1 + 13315 0.67 0.541231
Target:  5'- cGCCGaaaAGCuugaggugcucGACGGCAGCCGCGcCGGa -3'
miRNA:   3'- uUGGCg--UCG-----------UUGUCGUUGGCGUcGUC- -5'
12377 5' -56.1 NC_003324.1 + 26689 0.67 0.537967
Target:  5'- uGCCGCuGUugagcgugcuaccgGACAGCuugcgaCGCAGCAGg -3'
miRNA:   3'- uUGGCGuCG--------------UUGUCGuug---GCGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 18134 0.67 0.530377
Target:  5'- gAACCGCgaAGUGACGGCAcucGCCGCcuaucGCAu -3'
miRNA:   3'- -UUGGCG--UCGUUGUCGU---UGGCGu----CGUc -5'
12377 5' -56.1 NC_003324.1 + 41702 0.67 0.519603
Target:  5'- gAGCCGUGGCAAUGGUGGgCGUGGCu- -3'
miRNA:   3'- -UUGGCGUCGUUGUCGUUgGCGUCGuc -5'
12377 5' -56.1 NC_003324.1 + 47608 0.67 0.519603
Target:  5'- uGCCGCAGCuugAGCAGCAGuCCGgauagaAGguGa -3'
miRNA:   3'- uUGGCGUCG---UUGUCGUU-GGCg-----UCguC- -5'
12377 5' -56.1 NC_003324.1 + 39184 0.67 0.519603
Target:  5'- --gCGCAGCcacGGCGGCAACCGaucauaGGCGa -3'
miRNA:   3'- uugGCGUCG---UUGUCGUUGGCg-----UCGUc -5'
12377 5' -56.1 NC_003324.1 + 37716 0.67 0.516388
Target:  5'- aGACCG-AGCGAUguagcgaacuggaaAGCAGUCGCGGCAGc -3'
miRNA:   3'- -UUGGCgUCGUUG--------------UCGUUGGCGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 14793 0.68 0.508917
Target:  5'- aAAUCGCGGCGAagaacGCGGCCGgcauCGGCAGc -3'
miRNA:   3'- -UUGGCGUCGUUgu---CGUUGGC----GUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 35382 0.68 0.508917
Target:  5'- uGCUGCAGCcugcuCGGCcGCCGCGcGCAu -3'
miRNA:   3'- uUGGCGUCGuu---GUCGuUGGCGU-CGUc -5'
12377 5' -56.1 NC_003324.1 + 50111 0.68 0.508917
Target:  5'- aAACCGgAGCcgauCAGCGGCCcCAGCGc -3'
miRNA:   3'- -UUGGCgUCGuu--GUCGUUGGcGUCGUc -5'
12377 5' -56.1 NC_003324.1 + 28817 0.68 0.508917
Target:  5'- gGAgCGCGGC-GCGGgAACUGCAgaGCAGg -3'
miRNA:   3'- -UUgGCGUCGuUGUCgUUGGCGU--CGUC- -5'
12377 5' -56.1 NC_003324.1 + 7865 0.68 0.508917
Target:  5'- cGCCGCGGCGGCAaagcccguuGCGAUCGC-GCc- -3'
miRNA:   3'- uUGGCGUCGUUGU---------CGUUGGCGuCGuc -5'
12377 5' -56.1 NC_003324.1 + 3320 0.68 0.498324
Target:  5'- cACUGCAGCccgaaGACGGUcgccGACUGCAGUGGc -3'
miRNA:   3'- uUGGCGUCG-----UUGUCG----UUGGCGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 5635 0.68 0.498324
Target:  5'- -cCCGCGGCGAaGGUuGCgGCGGCAa -3'
miRNA:   3'- uuGGCGUCGUUgUCGuUGgCGUCGUc -5'
12377 5' -56.1 NC_003324.1 + 38997 0.68 0.498324
Target:  5'- cAGCCGCAGCGAguG-AGCCGguGaCGa -3'
miRNA:   3'- -UUGGCGUCGUUguCgUUGGCguC-GUc -5'
12377 5' -56.1 NC_003324.1 + 27081 0.68 0.487831
Target:  5'- uGGCCGguGCGGCucccuGCAucuGgCGCAGCAc -3'
miRNA:   3'- -UUGGCguCGUUGu----CGU---UgGCGUCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.