miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12377 5' -56.1 NC_003324.1 + 13315 0.67 0.541231
Target:  5'- cGCCGaaaAGCuugaggugcucGACGGCAGCCGCGcCGGa -3'
miRNA:   3'- uUGGCg--UCG-----------UUGUCGUUGGCGUcGUC- -5'
12377 5' -56.1 NC_003324.1 + 13468 0.66 0.581968
Target:  5'- gAGCUGCAGCAAUuccuGCAgauccucgauccguACgGCAGCGc -3'
miRNA:   3'- -UUGGCGUCGUUGu---CGU--------------UGgCGUCGUc -5'
12377 5' -56.1 NC_003324.1 + 14462 0.66 0.596443
Target:  5'- cGGuuGCGGCGcguugauugGCAGCAGCCGUGGa-- -3'
miRNA:   3'- -UUggCGUCGU---------UGUCGUUGGCGUCguc -5'
12377 5' -56.1 NC_003324.1 + 14496 0.69 0.446961
Target:  5'- aAGCCGguGCAGC--CAACacugCGCGGCAGg -3'
miRNA:   3'- -UUGGCguCGUUGucGUUG----GCGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 14759 0.66 0.585302
Target:  5'- gGGCUGCAGCucGACGGCuggaaAGCU-CAGCAGg -3'
miRNA:   3'- -UUGGCGUCG--UUGUCG-----UUGGcGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 14793 0.68 0.508917
Target:  5'- aAAUCGCGGCGAagaacGCGGCCGgcauCGGCAGc -3'
miRNA:   3'- -UUGGCGUCGUUgu---CGUUGGC----GUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 18134 0.67 0.530377
Target:  5'- gAACCGCgaAGUGACGGCAcucGCCGCcuaucGCAu -3'
miRNA:   3'- -UUGGCG--UCGUUGUCGU---UGGCGu----CGUc -5'
12377 5' -56.1 NC_003324.1 + 18986 0.68 0.457003
Target:  5'- cGACCG-AGCGggaaauACGGCGGCUGCAcGCGGc -3'
miRNA:   3'- -UUGGCgUCGU------UGUCGUUGGCGU-CGUC- -5'
12377 5' -56.1 NC_003324.1 + 21165 0.73 0.241592
Target:  5'- --aCGCAGCAcgcgccGCGGCGGCCGacaaGGCAGc -3'
miRNA:   3'- uugGCGUCGU------UGUCGUUGGCg---UCGUC- -5'
12377 5' -56.1 NC_003324.1 + 21596 0.66 0.630015
Target:  5'- cGCCGUGGCGGCcguccgaccuugAGCAACgcgacgggCGCGGCAu -3'
miRNA:   3'- uUGGCGUCGUUG------------UCGUUG--------GCGUCGUc -5'
12377 5' -56.1 NC_003324.1 + 23531 0.69 0.417592
Target:  5'- cGACCGCacgAGCGACGGCAagACUGUGGUc- -3'
miRNA:   3'- -UUGGCG---UCGUUGUCGU--UGGCGUCGuc -5'
12377 5' -56.1 NC_003324.1 + 24092 0.66 0.607615
Target:  5'- cAAgCGCAcGCAGCAGCccuACCGCcGCc- -3'
miRNA:   3'- -UUgGCGU-CGUUGUCGu--UGGCGuCGuc -5'
12377 5' -56.1 NC_003324.1 + 24208 0.7 0.362541
Target:  5'- uGGCCGCAGau-CAGCGcGCUGgAGCAGa -3'
miRNA:   3'- -UUGGCGUCguuGUCGU-UGGCgUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 24577 0.66 0.618809
Target:  5'- cACCGCuGCG--GGCGACCaGC-GCAGg -3'
miRNA:   3'- uUGGCGuCGUugUCGUUGG-CGuCGUC- -5'
12377 5' -56.1 NC_003324.1 + 25693 0.68 0.457003
Target:  5'- cAGCCGUGccggcGCAGCAGCGGCCGaCAGa-- -3'
miRNA:   3'- -UUGGCGU-----CGUUGUCGUUGGC-GUCguc -5'
12377 5' -56.1 NC_003324.1 + 26256 0.67 0.563152
Target:  5'- -cCCGCAGCGagaccgccgACAGaaugaugcaGGCCGcCAGCAGc -3'
miRNA:   3'- uuGGCGUCGU---------UGUCg--------UUGGC-GUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 26689 0.67 0.537967
Target:  5'- uGCCGCuGUugagcgugcuaccgGACAGCuugcgaCGCAGCAGg -3'
miRNA:   3'- uUGGCGuCG--------------UUGUCGuug---GCGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 27081 0.68 0.487831
Target:  5'- uGGCCGguGCGGCucccuGCAucuGgCGCAGCAc -3'
miRNA:   3'- -UUGGCguCGUUGu----CGU---UgGCGUCGUc -5'
12377 5' -56.1 NC_003324.1 + 27465 0.68 0.487831
Target:  5'- gAACCuCAGCGcaggccuguagACGGCAcgaaguACCGCAGCGa -3'
miRNA:   3'- -UUGGcGUCGU-----------UGUCGU------UGGCGUCGUc -5'
12377 5' -56.1 NC_003324.1 + 28817 0.68 0.508917
Target:  5'- gGAgCGCGGC-GCGGgAACUGCAgaGCAGg -3'
miRNA:   3'- -UUgGCGUCGuUGUCgUUGGCGU--CGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.