Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12377 | 5' | -56.1 | NC_003324.1 | + | 1742 | 0.69 | 0.437042 |
Target: 5'- cGCCGuCAGCGuCAGCAGgCGCAGg-- -3' miRNA: 3'- uUGGC-GUCGUuGUCGUUgGCGUCguc -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 1852 | 0.69 | 0.408067 |
Target: 5'- uGCUGCAGCAGCAGCuuCauucugGCGGcCGGg -3' miRNA: 3'- uUGGCGUCGUUGUCGuuGg-----CGUC-GUC- -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 2273 | 0.74 | 0.211369 |
Target: 5'- -cCCGCAGCGACcGCGACCcGCcccuGCGGg -3' miRNA: 3'- uuGGCGUCGUUGuCGUUGG-CGu---CGUC- -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 2359 | 0.66 | 0.618809 |
Target: 5'- -cCCGCAGgGGCGggucGCggUCGCuGCGGg -3' miRNA: 3'- uuGGCGUCgUUGU----CGuuGGCGuCGUC- -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 2685 | 0.71 | 0.320664 |
Target: 5'- uGGCCGCuucGGCAAgGGCAcgaugucgGCgGCGGCAGu -3' miRNA: 3'- -UUGGCG---UCGUUgUCGU--------UGgCGUCGUC- -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 3269 | 0.72 | 0.297328 |
Target: 5'- aAGCgGagGGCGGCGGCAACCGuCGGCAu -3' miRNA: 3'- -UUGgCg-UCGUUGUCGUUGGC-GUCGUc -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 3320 | 0.68 | 0.498324 |
Target: 5'- cACUGCAGCccgaaGACGGUcgccGACUGCAGUGGc -3' miRNA: 3'- uUGGCGUCG-----UUGUCG----UUGGCGUCGUC- -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 5635 | 0.68 | 0.498324 |
Target: 5'- -cCCGCGGCGAaGGUuGCgGCGGCAa -3' miRNA: 3'- uuGGCGUCGUUgUCGuUGgCGUCGUc -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 6224 | 0.73 | 0.229091 |
Target: 5'- aGGCCGaggcGCAGCAGCAG-CGCAGCAa -3' miRNA: 3'- -UUGGCgu--CGUUGUCGUUgGCGUCGUc -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 7865 | 0.68 | 0.508917 |
Target: 5'- cGCCGCGGCGGCAaagcccguuGCGAUCGC-GCc- -3' miRNA: 3'- uUGGCGUCGUUGU---------CGUUGGCGuCGuc -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 8179 | 0.75 | 0.189587 |
Target: 5'- cACagGC-GCAACGGCGACCGUGGCAGc -3' miRNA: 3'- uUGg-CGuCGUUGUCGUUGGCGUCGUC- -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 8222 | 0.71 | 0.345345 |
Target: 5'- uGAUCGCAGUcgAGCGcGCAGCUGCccGGCGGg -3' miRNA: 3'- -UUGGCGUCG--UUGU-CGUUGGCG--UCGUC- -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 8325 | 0.72 | 0.297328 |
Target: 5'- cGCCGuCGGCGcucguuACGGUGACCGuCGGCGGg -3' miRNA: 3'- uUGGC-GUCGU------UGUCGUUGGC-GUCGUC- -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 8854 | 0.72 | 0.275331 |
Target: 5'- cGGCCGUcgggAGCAuuuCGGUAGCCGCGGgAGa -3' miRNA: 3'- -UUGGCG----UCGUu--GUCGUUGGCGUCgUC- -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 9646 | 0.66 | 0.596443 |
Target: 5'- cACCGcCGGCAACGcCAACgCGCugGGCGGc -3' miRNA: 3'- uUGGC-GUCGUUGUcGUUG-GCG--UCGUC- -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 10567 | 0.71 | 0.312736 |
Target: 5'- -uUCG-GGCAACAGCAACaguGCAGCGGa -3' miRNA: 3'- uuGGCgUCGUUGUCGUUGg--CGUCGUC- -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 11441 | 0.71 | 0.348736 |
Target: 5'- -uCUGCGGCAAacugauugacaacauCAGCGACCGCGucGCGGu -3' miRNA: 3'- uuGGCGUCGUU---------------GUCGUUGGCGU--CGUC- -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 11604 | 0.66 | 0.585302 |
Target: 5'- aGACUGguGCGACGGCAGCgaugaacgugCGCuugaacgacGGCGGu -3' miRNA: 3'- -UUGGCguCGUUGUCGUUG----------GCG---------UCGUC- -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 11652 | 0.7 | 0.380323 |
Target: 5'- gAGCCGCGGgAGCAGCAucgGCUGCucgcccGCAa -3' miRNA: 3'- -UUGGCGUCgUUGUCGU---UGGCGu-----CGUc -5' |
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12377 | 5' | -56.1 | NC_003324.1 | + | 13170 | 0.72 | 0.297328 |
Target: 5'- aGGCUGCgucGGCGGCGGuCGGCgGCGGCGGu -3' miRNA: 3'- -UUGGCG---UCGUUGUC-GUUGgCGUCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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