miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12377 5' -56.1 NC_003324.1 + 37716 0.67 0.516388
Target:  5'- aGACCG-AGCGAUguagcgaacuggaaAGCAGUCGCGGCAGc -3'
miRNA:   3'- -UUGGCgUCGUUG--------------UCGUUGGCGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 29967 0.69 0.417592
Target:  5'- --gCGUAGCGGCGGCAGCCGgGuccGCAu -3'
miRNA:   3'- uugGCGUCGUUGUCGUUGGCgU---CGUc -5'
12377 5' -56.1 NC_003324.1 + 14496 0.69 0.446961
Target:  5'- aAGCCGguGCAGC--CAACacugCGCGGCAGg -3'
miRNA:   3'- -UUGGCguCGUUGucGUUG----GCGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 18986 0.68 0.457003
Target:  5'- cGACCG-AGCGggaaauACGGCGGCUGCAcGCGGc -3'
miRNA:   3'- -UUGGCgUCGU------UGUCGUUGGCGU-CGUC- -5'
12377 5' -56.1 NC_003324.1 + 27081 0.68 0.487831
Target:  5'- uGGCCGguGCGGCucccuGCAucuGgCGCAGCAc -3'
miRNA:   3'- -UUGGCguCGUUGu----CGU---UgGCGUCGUc -5'
12377 5' -56.1 NC_003324.1 + 3320 0.68 0.498324
Target:  5'- cACUGCAGCccgaaGACGGUcgccGACUGCAGUGGc -3'
miRNA:   3'- uUGGCGUCG-----UUGUCG----UUGGCGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 38997 0.68 0.498324
Target:  5'- cAGCCGCAGCGAguG-AGCCGguGaCGa -3'
miRNA:   3'- -UUGGCGUCGUUguCgUUGGCguC-GUc -5'
12377 5' -56.1 NC_003324.1 + 35382 0.68 0.508917
Target:  5'- uGCUGCAGCcugcuCGGCcGCCGCGcGCAu -3'
miRNA:   3'- uUGGCGUCGuu---GUCGuUGGCGU-CGUc -5'
12377 5' -56.1 NC_003324.1 + 14793 0.68 0.508917
Target:  5'- aAAUCGCGGCGAagaacGCGGCCGgcauCGGCAGc -3'
miRNA:   3'- -UUGGCGUCGUUgu---CGUUGGC----GUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 53921 0.69 0.417592
Target:  5'- --gCGCGGCAAguGCGcuucGCCGCcuGCAGa -3'
miRNA:   3'- uugGCGUCGUUguCGU----UGGCGu-CGUC- -5'
12377 5' -56.1 NC_003324.1 + 30063 0.69 0.408067
Target:  5'- cGCCGCcggucGCGACAcCGGCCGCuGCGGc -3'
miRNA:   3'- uUGGCGu----CGUUGUcGUUGGCGuCGUC- -5'
12377 5' -56.1 NC_003324.1 + 50783 0.7 0.38943
Target:  5'- -gUCGaCGGCGACGGCAaugcugccacACCGgAGCAGu -3'
miRNA:   3'- uuGGC-GUCGUUGUCGU----------UGGCgUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 2273 0.74 0.211369
Target:  5'- -cCCGCAGCGACcGCGACCcGCcccuGCGGg -3'
miRNA:   3'- uuGGCGUCGUUGuCGUUGG-CGu---CGUC- -5'
12377 5' -56.1 NC_003324.1 + 43406 0.74 0.213662
Target:  5'- uGACCGCAGuCGuggguggucucggcgACGGCGAaauuguagcuCCGCAGCAGg -3'
miRNA:   3'- -UUGGCGUC-GU---------------UGUCGUU----------GGCGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 6224 0.73 0.229091
Target:  5'- aGGCCGaggcGCAGCAGCAG-CGCAGCAa -3'
miRNA:   3'- -UUGGCgu--CGUUGUCGUUgGCGUCGUc -5'
12377 5' -56.1 NC_003324.1 + 8854 0.72 0.275331
Target:  5'- cGGCCGUcgggAGCAuuuCGGUAGCCGCGGgAGa -3'
miRNA:   3'- -UUGGCG----UCGUu--GUCGUUGGCGUCgUC- -5'
12377 5' -56.1 NC_003324.1 + 3269 0.72 0.297328
Target:  5'- aAGCgGagGGCGGCGGCAACCGuCGGCAu -3'
miRNA:   3'- -UUGgCg-UCGUUGUCGUUGGC-GUCGUc -5'
12377 5' -56.1 NC_003324.1 + 8325 0.72 0.297328
Target:  5'- cGCCGuCGGCGcucguuACGGUGACCGuCGGCGGg -3'
miRNA:   3'- uUGGC-GUCGU------UGUCGUUGGC-GUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 10567 0.71 0.312736
Target:  5'- -uUCG-GGCAACAGCAACaguGCAGCGGa -3'
miRNA:   3'- uuGGCgUCGUUGUCGUUGg--CGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 2685 0.71 0.320664
Target:  5'- uGGCCGCuucGGCAAgGGCAcgaugucgGCgGCGGCAGu -3'
miRNA:   3'- -UUGGCG---UCGUUgUCGU--------UGgCGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.