miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12377 5' -56.1 NC_003324.1 + 35414 1.05 0.001113
Target:  5'- cAACCGCAGCAACAGCAACCGCAGCAGc -3'
miRNA:   3'- -UUGGCGUCGUUGUCGUUGGCGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 35016 0.95 0.006904
Target:  5'- uGCCGCAGCAGCAGCAGCgGCGGCGGc -3'
miRNA:   3'- uUGGCGUCGUUGUCGUUGgCGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 55394 0.8 0.080583
Target:  5'- gAGCCGCuguGGCAGCuuguuccAGCAGCCGCGGCAa -3'
miRNA:   3'- -UUGGCG---UCGUUG-------UCGUUGGCGUCGUc -5'
12377 5' -56.1 NC_003324.1 + 30152 0.76 0.151885
Target:  5'- aAGCCGCAGCGGCcggugucGCGACCGgCGGCGu -3'
miRNA:   3'- -UUGGCGUCGUUGu------CGUUGGC-GUCGUc -5'
12377 5' -56.1 NC_003324.1 + 30617 0.75 0.179453
Target:  5'- cAGCgCGUcGCAGCGGCAGCgGCAGCGa -3'
miRNA:   3'- -UUG-GCGuCGUUGUCGUUGgCGUCGUc -5'
12377 5' -56.1 NC_003324.1 + 8179 0.75 0.189587
Target:  5'- cACagGC-GCAACGGCGACCGUGGCAGc -3'
miRNA:   3'- uUGg-CGuCGUUGUCGUUGGCGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 2273 0.74 0.211369
Target:  5'- -cCCGCAGCGACcGCGACCcGCcccuGCGGg -3'
miRNA:   3'- uuGGCGUCGUUGuCGUUGG-CGu---CGUC- -5'
12377 5' -56.1 NC_003324.1 + 43406 0.74 0.213662
Target:  5'- uGACCGCAGuCGuggguggucucggcgACGGCGAaauuguagcuCCGCAGCAGg -3'
miRNA:   3'- -UUGGCGUC-GU---------------UGUCGUU----------GGCGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 6224 0.73 0.229091
Target:  5'- aGGCCGaggcGCAGCAGCAG-CGCAGCAa -3'
miRNA:   3'- -UUGGCgu--CGUUGUCGUUgGCGUCGUc -5'
12377 5' -56.1 NC_003324.1 + 21165 0.73 0.241592
Target:  5'- --aCGCAGCAcgcgccGCGGCGGCCGacaaGGCAGc -3'
miRNA:   3'- uugGCGUCGU------UGUCGUUGGCg---UCGUC- -5'
12377 5' -56.1 NC_003324.1 + 35082 0.73 0.261402
Target:  5'- uGCUGCGGCAGCAaacGCAAaCGCuGCAGg -3'
miRNA:   3'- uUGGCGUCGUUGU---CGUUgGCGuCGUC- -5'
12377 5' -56.1 NC_003324.1 + 41215 0.72 0.268294
Target:  5'- uGCCGCAugacGCAACAGCuACCGCuccCAGg -3'
miRNA:   3'- uUGGCGU----CGUUGUCGuUGGCGuc-GUC- -5'
12377 5' -56.1 NC_003324.1 + 8854 0.72 0.275331
Target:  5'- cGGCCGUcgggAGCAuuuCGGUAGCCGCGGgAGa -3'
miRNA:   3'- -UUGGCG----UCGUu--GUCGUUGGCGUCgUC- -5'
12377 5' -56.1 NC_003324.1 + 31555 0.72 0.289847
Target:  5'- cGCCGUccCAACAGCGACgGCAGCu- -3'
miRNA:   3'- uUGGCGucGUUGUCGUUGgCGUCGuc -5'
12377 5' -56.1 NC_003324.1 + 8325 0.72 0.297328
Target:  5'- cGCCGuCGGCGcucguuACGGUGACCGuCGGCGGg -3'
miRNA:   3'- uUGGC-GUCGU------UGUCGUUGGC-GUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 13170 0.72 0.297328
Target:  5'- aGGCUGCgucGGCGGCGGuCGGCgGCGGCGGu -3'
miRNA:   3'- -UUGGCG---UCGUUGUC-GUUGgCGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 3269 0.72 0.297328
Target:  5'- aAGCgGagGGCGGCGGCAACCGuCGGCAu -3'
miRNA:   3'- -UUGgCg-UCGUUGUCGUUGGC-GUCGUc -5'
12377 5' -56.1 NC_003324.1 + 10567 0.71 0.312736
Target:  5'- -uUCG-GGCAACAGCAACaguGCAGCGGa -3'
miRNA:   3'- uuGGCgUCGUUGUCGUUGg--CGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 2685 0.71 0.320664
Target:  5'- uGGCCGCuucGGCAAgGGCAcgaugucgGCgGCGGCAGu -3'
miRNA:   3'- -UUGGCG---UCGUUgUCGU--------UGgCGUCGUC- -5'
12377 5' -56.1 NC_003324.1 + 35721 0.71 0.336139
Target:  5'- aGGCCGaGGCcaAACAGCAGCagaugaugcugcgCGCAGCAGa -3'
miRNA:   3'- -UUGGCgUCG--UUGUCGUUG-------------GCGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.