Results 21 - 40 of 81 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12377 | 5' | -56.1 | NC_003324.1 | + | 33684 | 0.71 | 0.336969 |
Target: 5'- cGCCGuCGGCAACGcGCugcGCaaaGCAGCAGg -3' miRNA: 3'- uUGGC-GUCGUUGU-CGu--UGg--CGUCGUC- -5' |
|||||||
12377 | 5' | -56.1 | NC_003324.1 | + | 35468 | 0.71 | 0.345345 |
Target: 5'- cAugCGCgGGCGGCcgAGCAgGCUGCAGCAGc -3' miRNA: 3'- -UugGCG-UCGUUG--UCGU-UGGCGUCGUC- -5' |
|||||||
12377 | 5' | -56.1 | NC_003324.1 | + | 8222 | 0.71 | 0.345345 |
Target: 5'- uGAUCGCAGUcgAGCGcGCAGCUGCccGGCGGg -3' miRNA: 3'- -UUGGCGUCG--UUGU-CGUUGGCG--UCGUC- -5' |
|||||||
12377 | 5' | -56.1 | NC_003324.1 | + | 11441 | 0.71 | 0.348736 |
Target: 5'- -uCUGCGGCAAacugauugacaacauCAGCGACCGCGucGCGGu -3' miRNA: 3'- uuGGCGUCGUU---------------GUCGUUGGCGU--CGUC- -5' |
|||||||
12377 | 5' | -56.1 | NC_003324.1 | + | 24208 | 0.7 | 0.362541 |
Target: 5'- uGGCCGCAGau-CAGCGcGCUGgAGCAGa -3' miRNA: 3'- -UUGGCGUCguuGUCGU-UGGCgUCGUC- -5' |
|||||||
12377 | 5' | -56.1 | NC_003324.1 | + | 40332 | 0.7 | 0.362541 |
Target: 5'- gGACCGCAcGCAagGCGGCAGUCG-AGCGGg -3' miRNA: 3'- -UUGGCGU-CGU--UGUCGUUGGCgUCGUC- -5' |
|||||||
12377 | 5' | -56.1 | NC_003324.1 | + | 31215 | 0.7 | 0.374928 |
Target: 5'- aGGCCuGCAGCGccaggcgcaagaacaAgCAGCAGCCgaGCAGCAGc -3' miRNA: 3'- -UUGG-CGUCGU---------------U-GUCGUUGG--CGUCGUC- -5' |
|||||||
12377 | 5' | -56.1 | NC_003324.1 | + | 11652 | 0.7 | 0.380323 |
Target: 5'- gAGCCGCGGgAGCAGCAucgGCUGCucgcccGCAa -3' miRNA: 3'- -UUGGCGUCgUUGUCGU---UGGCGu-----CGUc -5' |
|||||||
12377 | 5' | -56.1 | NC_003324.1 | + | 50783 | 0.7 | 0.38943 |
Target: 5'- -gUCGaCGGCGACGGCAaugcugccacACCGgAGCAGu -3' miRNA: 3'- uuGGC-GUCGUUGUCGU----------UGGCgUCGUC- -5' |
|||||||
12377 | 5' | -56.1 | NC_003324.1 | + | 30063 | 0.69 | 0.408067 |
Target: 5'- cGCCGCcggucGCGACAcCGGCCGCuGCGGc -3' miRNA: 3'- uUGGCGu----CGUUGUcGUUGGCGuCGUC- -5' |
|||||||
12377 | 5' | -56.1 | NC_003324.1 | + | 1852 | 0.69 | 0.408067 |
Target: 5'- uGCUGCAGCAGCAGCuuCauucugGCGGcCGGg -3' miRNA: 3'- uUGGCGUCGUUGUCGuuGg-----CGUC-GUC- -5' |
|||||||
12377 | 5' | -56.1 | NC_003324.1 | + | 23531 | 0.69 | 0.417592 |
Target: 5'- cGACCGCacgAGCGACGGCAagACUGUGGUc- -3' miRNA: 3'- -UUGGCG---UCGUUGUCGU--UGGCGUCGuc -5' |
|||||||
12377 | 5' | -56.1 | NC_003324.1 | + | 29967 | 0.69 | 0.417592 |
Target: 5'- --gCGUAGCGGCGGCAGCCGgGuccGCAu -3' miRNA: 3'- uugGCGUCGUUGUCGUUGGCgU---CGUc -5' |
|||||||
12377 | 5' | -56.1 | NC_003324.1 | + | 53921 | 0.69 | 0.417592 |
Target: 5'- --gCGCGGCAAguGCGcuucGCCGCcuGCAGa -3' miRNA: 3'- uugGCGUCGUUguCGU----UGGCGu-CGUC- -5' |
|||||||
12377 | 5' | -56.1 | NC_003324.1 | + | 1742 | 0.69 | 0.437042 |
Target: 5'- cGCCGuCAGCGuCAGCAGgCGCAGg-- -3' miRNA: 3'- uUGGC-GUCGUuGUCGUUgGCGUCguc -5' |
|||||||
12377 | 5' | -56.1 | NC_003324.1 | + | 14496 | 0.69 | 0.446961 |
Target: 5'- aAGCCGguGCAGC--CAACacugCGCGGCAGg -3' miRNA: 3'- -UUGGCguCGUUGucGUUG----GCGUCGUC- -5' |
|||||||
12377 | 5' | -56.1 | NC_003324.1 | + | 53020 | 0.68 | 0.457003 |
Target: 5'- uACCGgAGCAACuguuuccagccaGGCGACgaUGCGGCGGa -3' miRNA: 3'- uUGGCgUCGUUG------------UCGUUG--GCGUCGUC- -5' |
|||||||
12377 | 5' | -56.1 | NC_003324.1 | + | 25693 | 0.68 | 0.457003 |
Target: 5'- cAGCCGUGccggcGCAGCAGCGGCCGaCAGa-- -3' miRNA: 3'- -UUGGCGU-----CGUUGUCGUUGGC-GUCguc -5' |
|||||||
12377 | 5' | -56.1 | NC_003324.1 | + | 18986 | 0.68 | 0.457003 |
Target: 5'- cGACCG-AGCGggaaauACGGCGGCUGCAcGCGGc -3' miRNA: 3'- -UUGGCgUCGU------UGUCGUUGGCGU-CGUC- -5' |
|||||||
12377 | 5' | -56.1 | NC_003324.1 | + | 53504 | 0.68 | 0.467165 |
Target: 5'- uAACCGCAGU---AGUucgAGCCGUAGUAGg -3' miRNA: 3'- -UUGGCGUCGuugUCG---UUGGCGUCGUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home