miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12379 3' -56.7 NC_003324.1 + 2995 0.68 0.601448
Target:  5'- gUCGCUUCGaGCGgcccaguaauucGCCUCUaugcgGUCGAUCUg -3'
miRNA:   3'- -GGUGGAGC-CGC------------UGGAGGa----CAGCUAGG- -5'
12379 3' -56.7 NC_003324.1 + 32489 0.68 0.559208
Target:  5'- -aGCCUCGGCGAUCacggUGUCGAcgaugucgcUCCa -3'
miRNA:   3'- ggUGGAGCCGCUGGagg-ACAGCU---------AGG- -5'
12379 3' -56.7 NC_003324.1 + 16241 0.68 0.548767
Target:  5'- cCCGCCUCGGUG-CCagcgaugCCUGgcgCGGcCCc -3'
miRNA:   3'- -GGUGGAGCCGCuGGa------GGACa--GCUaGG- -5'
12379 3' -56.7 NC_003324.1 + 27971 0.68 0.548767
Target:  5'- gCACCUCGGUaccgGGCUUCacgaagaUGUCGAuauggUCCu -3'
miRNA:   3'- gGUGGAGCCG----CUGGAGg------ACAGCU-----AGG- -5'
12379 3' -56.7 NC_003324.1 + 38421 0.69 0.528077
Target:  5'- gCCGCCcCGGUGcCCUCgUGaUCGAgacgCCc -3'
miRNA:   3'- -GGUGGaGCCGCuGGAGgAC-AGCUa---GG- -5'
12379 3' -56.7 NC_003324.1 + 38561 0.69 0.51784
Target:  5'- uUCACCaggCGGuCGGCCUC--GUCGAUCa -3'
miRNA:   3'- -GGUGGa--GCC-GCUGGAGgaCAGCUAGg -5'
12379 3' -56.7 NC_003324.1 + 21861 0.69 0.507683
Target:  5'- gCCuCCUCGGCGGCCUuggCCUucuucgggGUCGAc-- -3'
miRNA:   3'- -GGuGGAGCCGCUGGA---GGA--------CAGCUagg -5'
12379 3' -56.7 NC_003324.1 + 30556 0.69 0.497612
Target:  5'- gCCugCUCGGCGGCg-CCgauUCGAcCCg -3'
miRNA:   3'- -GGugGAGCCGCUGgaGGac-AGCUaGG- -5'
12379 3' -56.7 NC_003324.1 + 15665 0.71 0.429895
Target:  5'- cCCGCCUUGGC-AUCUgCCgUGUCGGcCCa -3'
miRNA:   3'- -GGUGGAGCCGcUGGA-GG-ACAGCUaGG- -5'
12379 3' -56.7 NC_003324.1 + 34635 0.71 0.429895
Target:  5'- gCACCUCGGCGuCCagCaUGUCGAa-- -3'
miRNA:   3'- gGUGGAGCCGCuGGagG-ACAGCUagg -5'
12379 3' -56.7 NC_003324.1 + 37721 1.13 0.000534
Target:  5'- aCCACCUCGGCGACCUCCUGUCGAUCCc -3'
miRNA:   3'- -GGUGGAGCCGCUGGAGGACAGCUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.