Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12379 | 5' | -52.3 | NC_003324.1 | + | 35023 | 0.72 | 0.58889 |
Target: 5'- gCAGcAGCAGCGGCGgcGGcagcagcggccuGAUCGUCGUc -3' miRNA: 3'- -GUC-UUGUCGCUGCuuCU------------CUGGCAGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 35135 | 0.71 | 0.622106 |
Target: 5'- gCAGAaaccgGCAGCGACGAcGAucaGGCCGcUGCu -3' miRNA: 3'- -GUCU-----UGUCGCUGCUuCU---CUGGCaGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 36111 | 0.68 | 0.803214 |
Target: 5'- aAGuGC-GCGGCGAAaAGACCcUCGCg -3' miRNA: 3'- gUCuUGuCGCUGCUUcUCUGGcAGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 36295 | 0.68 | 0.803214 |
Target: 5'- uUAGGACAGUGGCaccuGGAGcugaUGUCGCg -3' miRNA: 3'- -GUCUUGUCGCUGcu--UCUCug--GCAGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 37687 | 1.13 | 0.001391 |
Target: 5'- uCAGAACAGCGACGAAGAGACCGUCGCa -3' miRNA: 3'- -GUCUUGUCGCUGCUUCUCUGGCAGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 38348 | 0.67 | 0.831313 |
Target: 5'- gAGGGCaccggGGCGGCGcuGGucGCCGUCGUg -3' miRNA: 3'- gUCUUG-----UCGCUGCu-UCucUGGCAGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 42077 | 0.68 | 0.812777 |
Target: 5'- aCGGAuuACGGCaACGAgccuaucagcAGGGGCCGggagCGCu -3' miRNA: 3'- -GUCU--UGUCGcUGCU----------UCUCUGGCa---GCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 43231 | 0.67 | 0.822147 |
Target: 5'- aGGAACA-CGAUGuAGGGGGCCGccugcagggUCGCc -3' miRNA: 3'- gUCUUGUcGCUGC-UUCUCUGGC---------AGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 44582 | 0.74 | 0.461407 |
Target: 5'- gCAGcgacACGGCGGCGAGGAacuGcCCGUUGCa -3' miRNA: 3'- -GUCu---UGUCGCUGCUUCU---CuGGCAGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 46478 | 0.7 | 0.688498 |
Target: 5'- -uGAACAGCcACGGgaAGAGGCgCGaUCGCu -3' miRNA: 3'- guCUUGUCGcUGCU--UCUCUG-GC-AGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 47784 | 0.66 | 0.865756 |
Target: 5'- --aAGCAGCaugucguCGAGGAGGCCGcgaagCGCg -3' miRNA: 3'- gucUUGUCGcu-----GCUUCUCUGGCa----GCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 48263 | 0.7 | 0.665365 |
Target: 5'- gAGAAcCAGCGAacgcggcCGAuAGGGACCacGUCGCu -3' miRNA: 3'- gUCUU-GUCGCU-------GCU-UCUCUGG--CAGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 48922 | 0.68 | 0.782552 |
Target: 5'- -uGAGCuGGCGAUGAAG-GACaucaccuCGUCGCc -3' miRNA: 3'- guCUUG-UCGCUGCUUCuCUG-------GCAGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 49788 | 0.68 | 0.812777 |
Target: 5'- gCAGGGCAGCGG-GAuaAGuGCCGUCGg -3' miRNA: 3'- -GUCUUGUCGCUgCUucUC-UGGCAGCg -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 49993 | 0.68 | 0.793469 |
Target: 5'- gGGGGCAGCGaagGCGAGcacGAGcgcGCCGaCGCa -3' miRNA: 3'- gUCUUGUCGC---UGCUU---CUC---UGGCaGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 50357 | 0.69 | 0.7318 |
Target: 5'- -uGAACAuuaCGACGGAGAuaaaaguGCCGUCGCc -3' miRNA: 3'- guCUUGUc--GCUGCUUCUc------UGGCAGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 50414 | 0.68 | 0.793469 |
Target: 5'- aAGAgcauagGCAGCGGCGAucAGGcGAUCGUCa- -3' miRNA: 3'- gUCU------UGUCGCUGCU--UCU-CUGGCAGcg -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 51908 | 0.72 | 0.58889 |
Target: 5'- gCAGAACAuCGACGAGaucGAGAUgGUgGCg -3' miRNA: 3'- -GUCUUGUcGCUGCUU---CUCUGgCAgCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 53258 | 0.69 | 0.707052 |
Target: 5'- gAGGACcuGCGaACGAAGAGgaaugaucgcgcccGCCgGUCGCg -3' miRNA: 3'- gUCUUGu-CGC-UGCUUCUC--------------UGG-CAGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 54494 | 0.69 | 0.763251 |
Target: 5'- gAGGcccgGCAGCGGuccCGggGAGuuGCCGUuCGCc -3' miRNA: 3'- gUCU----UGUCGCU---GCuuCUC--UGGCA-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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