miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12379 5' -52.3 NC_003324.1 + 3149 0.69 0.742401
Target:  5'- gGGAGCGccguGCGGCcauugaGAGAGACCG-CGCc -3'
miRNA:   3'- gUCUUGU----CGCUGc-----UUCUCUGGCaGCG- -5'
12379 5' -52.3 NC_003324.1 + 5186 0.67 0.857497
Target:  5'- gCAGGAaaaAGCGGCGc--AGAUCGUCGa -3'
miRNA:   3'- -GUCUUg--UCGCUGCuucUCUGGCAGCg -5'
12379 5' -52.3 NC_003324.1 + 7851 0.67 0.831313
Target:  5'- gCAGAAUGGCGggGCGGcAGuGACCGUUa- -3'
miRNA:   3'- -GUCUUGUCGC--UGCU-UCuCUGGCAGcg -5'
12379 5' -52.3 NC_003324.1 + 9941 0.69 0.717869
Target:  5'- uGGAACugcaugagguuuuaAGCGuCGAAGAGACCaacaCGCg -3'
miRNA:   3'- gUCUUG--------------UCGCuGCUUCUCUGGca--GCG- -5'
12379 5' -52.3 NC_003324.1 + 10701 0.71 0.640981
Target:  5'- aCGGAGCcacggccagcguugGGCGACuGGGGGACgGUUGCc -3'
miRNA:   3'- -GUCUUG--------------UCGCUGcUUCUCUGgCAGCG- -5'
12379 5' -52.3 NC_003324.1 + 15726 0.67 0.822147
Target:  5'- -----gAGCG-CGccGGGGCCGUCGCc -3'
miRNA:   3'- gucuugUCGCuGCuuCUCUGGCAGCG- -5'
12379 5' -52.3 NC_003324.1 + 16082 0.73 0.534376
Target:  5'- aGGAACGGCugaucaGCGAAGAGAUCGgacUGCa -3'
miRNA:   3'- gUCUUGUCGc-----UGCUUCUCUGGCa--GCG- -5'
12379 5' -52.3 NC_003324.1 + 16199 0.7 0.703792
Target:  5'- cCAGAaagguucuugucgauACcGCGACGggGcAGGCCGUgccgaCGCg -3'
miRNA:   3'- -GUCU---------------UGuCGCUGCuuC-UCUGGCA-----GCG- -5'
12379 5' -52.3 NC_003324.1 + 16324 0.66 0.895541
Target:  5'- gCAGAcGCAgcgguccGCGACGgcGuuGCCGUCGa -3'
miRNA:   3'- -GUCU-UGU-------CGCUGCuuCucUGGCAGCg -5'
12379 5' -52.3 NC_003324.1 + 18261 0.66 0.889022
Target:  5'- aCAGAGCcGCGACcgcugacgGAAucGGCCGaCGCg -3'
miRNA:   3'- -GUCUUGuCGCUG--------CUUcuCUGGCaGCG- -5'
12379 5' -52.3 NC_003324.1 + 20789 0.68 0.803214
Target:  5'- cCGGAACGuUGGCGAGGcggcGGACCGUguuggugaCGCg -3'
miRNA:   3'- -GUCUUGUcGCUGCUUC----UCUGGCA--------GCG- -5'
12379 5' -52.3 NC_003324.1 + 22752 0.66 0.865756
Target:  5'- -cGAGCAGCcuuuccaucuugGACuu-GAGAUUGUCGCg -3'
miRNA:   3'- guCUUGUCG------------CUGcuuCUCUGGCAGCG- -5'
12379 5' -52.3 NC_003324.1 + 24555 0.67 0.822147
Target:  5'- gAGAGCAGUGcCGGA-AGAUCGUCa- -3'
miRNA:   3'- gUCUUGUCGCuGCUUcUCUGGCAGcg -5'
12379 5' -52.3 NC_003324.1 + 29657 0.67 0.822147
Target:  5'- aGGAAUcgAGCGACGAGgccuuGAGGCCGcUUGa -3'
miRNA:   3'- gUCUUG--UCGCUGCUU-----CUCUGGC-AGCg -5'
12379 5' -52.3 NC_003324.1 + 30608 0.67 0.857497
Target:  5'- gCAGcGGCAGCGgcaGCGAAGGucgccACgGUCGCa -3'
miRNA:   3'- -GUC-UUGUCGC---UGCUUCUc----UGgCAGCG- -5'
12379 5' -52.3 NC_003324.1 + 31157 0.69 0.742401
Target:  5'- aGGAcCGGC-ACGGAcaaucAGGCCGUCGCa -3'
miRNA:   3'- gUCUuGUCGcUGCUUc----UCUGGCAGCG- -5'
12379 5' -52.3 NC_003324.1 + 31359 0.71 0.622106
Target:  5'- --cGACAGCGAacAAGAaGCCGUCGCc -3'
miRNA:   3'- gucUUGUCGCUgcUUCUcUGGCAGCG- -5'
12379 5' -52.3 NC_003324.1 + 32389 0.75 0.39404
Target:  5'- cCGGAgauGCGGCGccGCGcAGAGGCCGUUGUc -3'
miRNA:   3'- -GUCU---UGUCGC--UGCuUCUCUGGCAGCG- -5'
12379 5' -52.3 NC_003324.1 + 32543 0.66 0.865756
Target:  5'- cCGGcgaaGGCGACGAGGGcauggcuGCCGUUGCc -3'
miRNA:   3'- -GUCuug-UCGCUGCUUCUc------UGGCAGCG- -5'
12379 5' -52.3 NC_003324.1 + 34552 0.66 0.873768
Target:  5'- cCGGAGCuGCGACGu---GAUCGUCu- -3'
miRNA:   3'- -GUCUUGuCGCUGCuucuCUGGCAGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.