miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12379 5' -52.3 NC_003324.1 + 44582 0.74 0.461407
Target:  5'- gCAGcgacACGGCGGCGAGGAacuGcCCGUUGCa -3'
miRNA:   3'- -GUCu---UGUCGCUGCUUCU---CuGGCAGCG- -5'
12379 5' -52.3 NC_003324.1 + 24555 0.67 0.822147
Target:  5'- gAGAGCAGUGcCGGA-AGAUCGUCa- -3'
miRNA:   3'- gUCUUGUCGCuGCUUcUCUGGCAGcg -5'
12379 5' -52.3 NC_003324.1 + 43231 0.67 0.822147
Target:  5'- aGGAACA-CGAUGuAGGGGGCCGccugcagggUCGCc -3'
miRNA:   3'- gUCUUGUcGCUGC-UUCUCUGGC---------AGCG- -5'
12379 5' -52.3 NC_003324.1 + 38348 0.67 0.831313
Target:  5'- gAGGGCaccggGGCGGCGcuGGucGCCGUCGUg -3'
miRNA:   3'- gUCUUG-----UCGCUGCu-UCucUGGCAGCG- -5'
12379 5' -52.3 NC_003324.1 + 7851 0.67 0.831313
Target:  5'- gCAGAAUGGCGggGCGGcAGuGACCGUUa- -3'
miRNA:   3'- -GUCUUGUCGC--UGCU-UCuCUGGCAGcg -5'
12379 5' -52.3 NC_003324.1 + 22752 0.66 0.865756
Target:  5'- -cGAGCAGCcuuuccaucuugGACuu-GAGAUUGUCGCg -3'
miRNA:   3'- guCUUGUCG------------CUGcuuCUCUGGCAGCG- -5'
12379 5' -52.3 NC_003324.1 + 34552 0.66 0.873768
Target:  5'- cCGGAGCuGCGACGu---GAUCGUCu- -3'
miRNA:   3'- -GUCUUGuCGCUGCuucuCUGGCAGcg -5'
12379 5' -52.3 NC_003324.1 + 18261 0.66 0.889022
Target:  5'- aCAGAGCcGCGACcgcugacgGAAucGGCCGaCGCg -3'
miRNA:   3'- -GUCUUGuCGCUG--------CUUcuCUGGCaGCG- -5'
12379 5' -52.3 NC_003324.1 + 16324 0.66 0.895541
Target:  5'- gCAGAcGCAgcgguccGCGACGgcGuuGCCGUCGa -3'
miRNA:   3'- -GUCU-UGU-------CGCUGCuuCucUGGCAGCg -5'
12379 5' -52.3 NC_003324.1 + 42077 0.68 0.812777
Target:  5'- aCGGAuuACGGCaACGAgccuaucagcAGGGGCCGggagCGCu -3'
miRNA:   3'- -GUCU--UGUCGcUGCU----------UCUCUGGCa---GCG- -5'
12379 5' -52.3 NC_003324.1 + 20789 0.68 0.803214
Target:  5'- cCGGAACGuUGGCGAGGcggcGGACCGUguuggugaCGCg -3'
miRNA:   3'- -GUCUUGUcGCUGCUUC----UCUGGCA--------GCG- -5'
12379 5' -52.3 NC_003324.1 + 50357 0.69 0.7318
Target:  5'- -uGAACAuuaCGACGGAGAuaaaaguGCCGUCGCc -3'
miRNA:   3'- guCUUGUc--GCUGCUUCUc------UGGCAGCG- -5'
12379 5' -52.3 NC_003324.1 + 55424 0.73 0.534376
Target:  5'- -uGAACAGUGGCGucGuguGGACCGaCGCa -3'
miRNA:   3'- guCUUGUCGCUGCuuC---UCUGGCaGCG- -5'
12379 5' -52.3 NC_003324.1 + 16082 0.73 0.534376
Target:  5'- aGGAACGGCugaucaGCGAAGAGAUCGgacUGCa -3'
miRNA:   3'- gUCUUGUCGc-----UGCUUCUCUGGCa--GCG- -5'
12379 5' -52.3 NC_003324.1 + 35023 0.72 0.58889
Target:  5'- gCAGcAGCAGCGGCGgcGGcagcagcggccuGAUCGUCGUc -3'
miRNA:   3'- -GUC-UUGUCGCUGCuuCU------------CUGGCAGCG- -5'
12379 5' -52.3 NC_003324.1 + 51908 0.72 0.58889
Target:  5'- gCAGAACAuCGACGAGaucGAGAUgGUgGCg -3'
miRNA:   3'- -GUCUUGUcGCUGCUU---CUCUGgCAgCG- -5'
12379 5' -52.3 NC_003324.1 + 46478 0.7 0.688498
Target:  5'- -uGAACAGCcACGGgaAGAGGCgCGaUCGCu -3'
miRNA:   3'- guCUUGUCGcUGCU--UCUCUG-GC-AGCG- -5'
12379 5' -52.3 NC_003324.1 + 16199 0.7 0.703792
Target:  5'- cCAGAaagguucuugucgauACcGCGACGggGcAGGCCGUgccgaCGCg -3'
miRNA:   3'- -GUCU---------------UGuCGCUGCuuC-UCUGGCA-----GCG- -5'
12379 5' -52.3 NC_003324.1 + 53258 0.69 0.707052
Target:  5'- gAGGACcuGCGaACGAAGAGgaaugaucgcgcccGCCgGUCGCg -3'
miRNA:   3'- gUCUUGu-CGC-UGCUUCUC--------------UGG-CAGCG- -5'
12379 5' -52.3 NC_003324.1 + 9941 0.69 0.717869
Target:  5'- uGGAACugcaugagguuuuaAGCGuCGAAGAGACCaacaCGCg -3'
miRNA:   3'- gUCUUG--------------UCGCuGCUUCUCUGGca--GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.