miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12379 5' -52.3 NC_003324.1 + 47784 0.66 0.865756
Target:  5'- --aAGCAGCaugucguCGAGGAGGCCGcgaagCGCg -3'
miRNA:   3'- gucUUGUCGcu-----GCUUCUCUGGCa----GCG- -5'
12379 5' -52.3 NC_003324.1 + 16324 0.66 0.895541
Target:  5'- gCAGAcGCAgcgguccGCGACGgcGuuGCCGUCGa -3'
miRNA:   3'- -GUCU-UGU-------CGCUGCuuCucUGGCAGCg -5'
12379 5' -52.3 NC_003324.1 + 18261 0.66 0.889022
Target:  5'- aCAGAGCcGCGACcgcugacgGAAucGGCCGaCGCg -3'
miRNA:   3'- -GUCUUGuCGCUG--------CUUcuCUGGCaGCG- -5'
12379 5' -52.3 NC_003324.1 + 34552 0.66 0.873768
Target:  5'- cCGGAGCuGCGACGu---GAUCGUCu- -3'
miRNA:   3'- -GUCUUGuCGCUGCuucuCUGGCAGcg -5'
12379 5' -52.3 NC_003324.1 + 22752 0.66 0.865756
Target:  5'- -cGAGCAGCcuuuccaucuugGACuu-GAGAUUGUCGCg -3'
miRNA:   3'- guCUUGUCG------------CUGcuuCUCUGGCAGCG- -5'
12379 5' -52.3 NC_003324.1 + 32543 0.66 0.865756
Target:  5'- cCGGcgaaGGCGACGAGGGcauggcuGCCGUUGCc -3'
miRNA:   3'- -GUCuug-UCGCUGCUUCUc------UGGCAGCG- -5'
12379 5' -52.3 NC_003324.1 + 43231 0.67 0.822147
Target:  5'- aGGAACA-CGAUGuAGGGGGCCGccugcagggUCGCc -3'
miRNA:   3'- gUCUUGUcGCUGC-UUCUCUGGC---------AGCG- -5'
12379 5' -52.3 NC_003324.1 + 5186 0.67 0.857497
Target:  5'- gCAGGAaaaAGCGGCGc--AGAUCGUCGa -3'
miRNA:   3'- -GUCUUg--UCGCUGCuucUCUGGCAGCg -5'
12379 5' -52.3 NC_003324.1 + 30608 0.67 0.857497
Target:  5'- gCAGcGGCAGCGgcaGCGAAGGucgccACgGUCGCa -3'
miRNA:   3'- -GUC-UUGUCGC---UGCUUCUc----UGgCAGCG- -5'
12379 5' -52.3 NC_003324.1 + 29657 0.67 0.822147
Target:  5'- aGGAAUcgAGCGACGAGgccuuGAGGCCGcUUGa -3'
miRNA:   3'- gUCUUG--UCGCUGCUU-----CUCUGGC-AGCg -5'
12379 5' -52.3 NC_003324.1 + 15726 0.67 0.822147
Target:  5'- -----gAGCG-CGccGGGGCCGUCGCc -3'
miRNA:   3'- gucuugUCGCuGCuuCUCUGGCAGCG- -5'
12379 5' -52.3 NC_003324.1 + 7851 0.67 0.831313
Target:  5'- gCAGAAUGGCGggGCGGcAGuGACCGUUa- -3'
miRNA:   3'- -GUCUUGUCGC--UGCU-UCuCUGGCAGcg -5'
12379 5' -52.3 NC_003324.1 + 24555 0.67 0.822147
Target:  5'- gAGAGCAGUGcCGGA-AGAUCGUCa- -3'
miRNA:   3'- gUCUUGUCGCuGCUUcUCUGGCAGcg -5'
12379 5' -52.3 NC_003324.1 + 38348 0.67 0.831313
Target:  5'- gAGGGCaccggGGCGGCGcuGGucGCCGUCGUg -3'
miRNA:   3'- gUCUUG-----UCGCUGCu-UCucUGGCAGCG- -5'
12379 5' -52.3 NC_003324.1 + 36111 0.68 0.803214
Target:  5'- aAGuGC-GCGGCGAAaAGACCcUCGCg -3'
miRNA:   3'- gUCuUGuCGCUGCUUcUCUGGcAGCG- -5'
12379 5' -52.3 NC_003324.1 + 42077 0.68 0.812777
Target:  5'- aCGGAuuACGGCaACGAgccuaucagcAGGGGCCGggagCGCu -3'
miRNA:   3'- -GUCU--UGUCGcUGCU----------UCUCUGGCa---GCG- -5'
12379 5' -52.3 NC_003324.1 + 49788 0.68 0.812777
Target:  5'- gCAGGGCAGCGG-GAuaAGuGCCGUCGg -3'
miRNA:   3'- -GUCUUGUCGCUgCUucUC-UGGCAGCg -5'
12379 5' -52.3 NC_003324.1 + 49993 0.68 0.793469
Target:  5'- gGGGGCAGCGaagGCGAGcacGAGcgcGCCGaCGCa -3'
miRNA:   3'- gUCUUGUCGC---UGCUU---CUC---UGGCaGCG- -5'
12379 5' -52.3 NC_003324.1 + 36295 0.68 0.803214
Target:  5'- uUAGGACAGUGGCaccuGGAGcugaUGUCGCg -3'
miRNA:   3'- -GUCUUGUCGCUGcu--UCUCug--GCAGCG- -5'
12379 5' -52.3 NC_003324.1 + 20789 0.68 0.803214
Target:  5'- cCGGAACGuUGGCGAGGcggcGGACCGUguuggugaCGCg -3'
miRNA:   3'- -GUCUUGUcGCUGCUUC----UCUGGCA--------GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.