miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12379 5' -52.3 NC_003324.1 + 37687 1.13 0.001391
Target:  5'- uCAGAACAGCGACGAAGAGACCGUCGCa -3'
miRNA:   3'- -GUCUUGUCGCUGCUUCUCUGGCAGCG- -5'
12379 5' -52.3 NC_003324.1 + 32389 0.75 0.39404
Target:  5'- cCGGAgauGCGGCGccGCGcAGAGGCCGUUGUc -3'
miRNA:   3'- -GUCU---UGUCGC--UGCuUCUCUGGCAGCG- -5'
12379 5' -52.3 NC_003324.1 + 44582 0.74 0.461407
Target:  5'- gCAGcgacACGGCGGCGAGGAacuGcCCGUUGCa -3'
miRNA:   3'- -GUCu---UGUCGCUGCUUCU---CuGGCAGCG- -5'
12379 5' -52.3 NC_003324.1 + 55424 0.73 0.534376
Target:  5'- -uGAACAGUGGCGucGuguGGACCGaCGCa -3'
miRNA:   3'- guCUUGUCGCUGCuuC---UCUGGCaGCG- -5'
12379 5' -52.3 NC_003324.1 + 16082 0.73 0.534376
Target:  5'- aGGAACGGCugaucaGCGAAGAGAUCGgacUGCa -3'
miRNA:   3'- gUCUUGUCGc-----UGCUUCUCUGGCa--GCG- -5'
12379 5' -52.3 NC_003324.1 + 57033 0.72 0.556005
Target:  5'- gGGAGCGGCGGCGAGGGcGCgGaUGCc -3'
miRNA:   3'- gUCUUGUCGCUGCUUCUcUGgCaGCG- -5'
12379 5' -52.3 NC_003324.1 + 35023 0.72 0.58889
Target:  5'- gCAGcAGCAGCGGCGgcGGcagcagcggccuGAUCGUCGUc -3'
miRNA:   3'- -GUC-UUGUCGCUGCuuCU------------CUGGCAGCG- -5'
12379 5' -52.3 NC_003324.1 + 51908 0.72 0.58889
Target:  5'- gCAGAACAuCGACGAGaucGAGAUgGUgGCg -3'
miRNA:   3'- -GUCUUGUcGCUGCUU---CUCUGgCAgCG- -5'
12379 5' -52.3 NC_003324.1 + 35135 0.71 0.622106
Target:  5'- gCAGAaaccgGCAGCGACGAcGAucaGGCCGcUGCu -3'
miRNA:   3'- -GUCU-----UGUCGCUGCUuCU---CUGGCaGCG- -5'
12379 5' -52.3 NC_003324.1 + 31359 0.71 0.622106
Target:  5'- --cGACAGCGAacAAGAaGCCGUCGCc -3'
miRNA:   3'- gucUUGUCGCUgcUUCUcUGGCAGCG- -5'
12379 5' -52.3 NC_003324.1 + 10701 0.71 0.640981
Target:  5'- aCGGAGCcacggccagcguugGGCGACuGGGGGACgGUUGCc -3'
miRNA:   3'- -GUCUUG--------------UCGCUGcUUCUCUGgCAGCG- -5'
12379 5' -52.3 NC_003324.1 + 48263 0.7 0.665365
Target:  5'- gAGAAcCAGCGAacgcggcCGAuAGGGACCacGUCGCu -3'
miRNA:   3'- gUCUU-GUCGCU-------GCU-UCUCUGG--CAGCG- -5'
12379 5' -52.3 NC_003324.1 + 46478 0.7 0.688498
Target:  5'- -uGAACAGCcACGGgaAGAGGCgCGaUCGCu -3'
miRNA:   3'- guCUUGUCGcUGCU--UCUCUG-GC-AGCG- -5'
12379 5' -52.3 NC_003324.1 + 16199 0.7 0.703792
Target:  5'- cCAGAaagguucuugucgauACcGCGACGggGcAGGCCGUgccgaCGCg -3'
miRNA:   3'- -GUCU---------------UGuCGCUGCuuC-UCUGGCA-----GCG- -5'
12379 5' -52.3 NC_003324.1 + 53258 0.69 0.707052
Target:  5'- gAGGACcuGCGaACGAAGAGgaaugaucgcgcccGCCgGUCGCg -3'
miRNA:   3'- gUCUUGu-CGC-UGCUUCUC--------------UGG-CAGCG- -5'
12379 5' -52.3 NC_003324.1 + 9941 0.69 0.717869
Target:  5'- uGGAACugcaugagguuuuaAGCGuCGAAGAGACCaacaCGCg -3'
miRNA:   3'- gUCUUG--------------UCGCuGCUUCUCUGGca--GCG- -5'
12379 5' -52.3 NC_003324.1 + 50357 0.69 0.7318
Target:  5'- -uGAACAuuaCGACGGAGAuaaaaguGCCGUCGCc -3'
miRNA:   3'- guCUUGUc--GCUGCUUCUc------UGGCAGCG- -5'
12379 5' -52.3 NC_003324.1 + 31157 0.69 0.742401
Target:  5'- aGGAcCGGC-ACGGAcaaucAGGCCGUCGCa -3'
miRNA:   3'- gUCUuGUCGcUGCUUc----UCUGGCAGCG- -5'
12379 5' -52.3 NC_003324.1 + 3149 0.69 0.742401
Target:  5'- gGGAGCGccguGCGGCcauugaGAGAGACCG-CGCc -3'
miRNA:   3'- gUCUUGU----CGCUGc-----UUCUCUGGCaGCG- -5'
12379 5' -52.3 NC_003324.1 + 54494 0.69 0.763251
Target:  5'- gAGGcccgGCAGCGGuccCGggGAGuuGCCGUuCGCc -3'
miRNA:   3'- gUCU----UGUCGCU---GCuuCUC--UGGCA-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.