Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12379 | 5' | -52.3 | NC_003324.1 | + | 37687 | 1.13 | 0.001391 |
Target: 5'- uCAGAACAGCGACGAAGAGACCGUCGCa -3' miRNA: 3'- -GUCUUGUCGCUGCUUCUCUGGCAGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 32389 | 0.75 | 0.39404 |
Target: 5'- cCGGAgauGCGGCGccGCGcAGAGGCCGUUGUc -3' miRNA: 3'- -GUCU---UGUCGC--UGCuUCUCUGGCAGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 44582 | 0.74 | 0.461407 |
Target: 5'- gCAGcgacACGGCGGCGAGGAacuGcCCGUUGCa -3' miRNA: 3'- -GUCu---UGUCGCUGCUUCU---CuGGCAGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 55424 | 0.73 | 0.534376 |
Target: 5'- -uGAACAGUGGCGucGuguGGACCGaCGCa -3' miRNA: 3'- guCUUGUCGCUGCuuC---UCUGGCaGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 16082 | 0.73 | 0.534376 |
Target: 5'- aGGAACGGCugaucaGCGAAGAGAUCGgacUGCa -3' miRNA: 3'- gUCUUGUCGc-----UGCUUCUCUGGCa--GCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 51908 | 0.72 | 0.58889 |
Target: 5'- gCAGAACAuCGACGAGaucGAGAUgGUgGCg -3' miRNA: 3'- -GUCUUGUcGCUGCUU---CUCUGgCAgCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 35023 | 0.72 | 0.58889 |
Target: 5'- gCAGcAGCAGCGGCGgcGGcagcagcggccuGAUCGUCGUc -3' miRNA: 3'- -GUC-UUGUCGCUGCuuCU------------CUGGCAGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 57033 | 0.72 | 0.556005 |
Target: 5'- gGGAGCGGCGGCGAGGGcGCgGaUGCc -3' miRNA: 3'- gUCUUGUCGCUGCUUCUcUGgCaGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 10701 | 0.71 | 0.640981 |
Target: 5'- aCGGAGCcacggccagcguugGGCGACuGGGGGACgGUUGCc -3' miRNA: 3'- -GUCUUG--------------UCGCUGcUUCUCUGgCAGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 31359 | 0.71 | 0.622106 |
Target: 5'- --cGACAGCGAacAAGAaGCCGUCGCc -3' miRNA: 3'- gucUUGUCGCUgcUUCUcUGGCAGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 35135 | 0.71 | 0.622106 |
Target: 5'- gCAGAaaccgGCAGCGACGAcGAucaGGCCGcUGCu -3' miRNA: 3'- -GUCU-----UGUCGCUGCUuCU---CUGGCaGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 46478 | 0.7 | 0.688498 |
Target: 5'- -uGAACAGCcACGGgaAGAGGCgCGaUCGCu -3' miRNA: 3'- guCUUGUCGcUGCU--UCUCUG-GC-AGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 48263 | 0.7 | 0.665365 |
Target: 5'- gAGAAcCAGCGAacgcggcCGAuAGGGACCacGUCGCu -3' miRNA: 3'- gUCUU-GUCGCU-------GCU-UCUCUGG--CAGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 16199 | 0.7 | 0.703792 |
Target: 5'- cCAGAaagguucuugucgauACcGCGACGggGcAGGCCGUgccgaCGCg -3' miRNA: 3'- -GUCU---------------UGuCGCUGCuuC-UCUGGCA-----GCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 3149 | 0.69 | 0.742401 |
Target: 5'- gGGAGCGccguGCGGCcauugaGAGAGACCG-CGCc -3' miRNA: 3'- gUCUUGU----CGCUGc-----UUCUCUGGCaGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 31157 | 0.69 | 0.742401 |
Target: 5'- aGGAcCGGC-ACGGAcaaucAGGCCGUCGCa -3' miRNA: 3'- gUCUuGUCGcUGCUUc----UCUGGCAGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 50357 | 0.69 | 0.7318 |
Target: 5'- -uGAACAuuaCGACGGAGAuaaaaguGCCGUCGCc -3' miRNA: 3'- guCUUGUc--GCUGCUUCUc------UGGCAGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 9941 | 0.69 | 0.717869 |
Target: 5'- uGGAACugcaugagguuuuaAGCGuCGAAGAGACCaacaCGCg -3' miRNA: 3'- gUCUUG--------------UCGCuGCUUCUCUGGca--GCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 53258 | 0.69 | 0.707052 |
Target: 5'- gAGGACcuGCGaACGAAGAGgaaugaucgcgcccGCCgGUCGCg -3' miRNA: 3'- gUCUUGu-CGC-UGCUUCUC--------------UGG-CAGCG- -5' |
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12379 | 5' | -52.3 | NC_003324.1 | + | 54494 | 0.69 | 0.763251 |
Target: 5'- gAGGcccgGCAGCGGuccCGggGAGuuGCCGUuCGCc -3' miRNA: 3'- gUCU----UGUCGCU---GCuuCUC--UGGCA-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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