miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12384 3' -60 NC_003324.1 + 29152 0.66 0.508735
Target:  5'- cGCCAAGCuuCuuGGcaaugaccuGCuCGCGgGCGAGGUc -3'
miRNA:   3'- -CGGUUCG--GggCC---------UG-GCGUgCGUUCCG- -5'
12384 3' -60 NC_003324.1 + 14497 0.66 0.508735
Target:  5'- aGCCGgugcAGCCaac-ACUGCGCGgCAGGGCg -3'
miRNA:   3'- -CGGU----UCGGggccUGGCGUGC-GUUCCG- -5'
12384 3' -60 NC_003324.1 + 29476 0.66 0.508735
Target:  5'- cGCCuGGCUgCGGGCgCGUcggGCGCAucucGGUa -3'
miRNA:   3'- -CGGuUCGGgGCCUG-GCG---UGCGUu---CCG- -5'
12384 3' -60 NC_003324.1 + 29840 0.66 0.508735
Target:  5'- aGCCGAuCCuuGGG-CGCAU-CGAGGCg -3'
miRNA:   3'- -CGGUUcGGggCCUgGCGUGcGUUCCG- -5'
12384 3' -60 NC_003324.1 + 30061 0.66 0.508735
Target:  5'- gGCCGGGaucgaugcggaCCCGGcugccGCCGCuACGCAGGacGCc -3'
miRNA:   3'- -CGGUUCg----------GGGCC-----UGGCG-UGCGUUC--CG- -5'
12384 3' -60 NC_003324.1 + 47653 0.66 0.507727
Target:  5'- cGUCGAGCUguggcacgCCGGugCGCugGaCAGuuccgucGGCg -3'
miRNA:   3'- -CGGUUCGG--------GGCCugGCGugC-GUU-------CCG- -5'
12384 3' -60 NC_003324.1 + 25237 0.66 0.507727
Target:  5'- uUCGAGCaCCUGG-CCGCccuuaaaGC-CAAGGCg -3'
miRNA:   3'- cGGUUCG-GGGCCuGGCG-------UGcGUUCCG- -5'
12384 3' -60 NC_003324.1 + 4553 0.66 0.498695
Target:  5'- aGCCGcGCCgUGaucGAgCGCGCGCAgguccAGGCc -3'
miRNA:   3'- -CGGUuCGGgGC---CUgGCGUGCGU-----UCCG- -5'
12384 3' -60 NC_003324.1 + 38553 0.66 0.498695
Target:  5'- aCCGgcAGCUCCGGGCgauagggcaCGCGCGUGAuGCg -3'
miRNA:   3'- cGGU--UCGGGGCCUG---------GCGUGCGUUcCG- -5'
12384 3' -60 NC_003324.1 + 28619 0.66 0.498695
Target:  5'- cGCCcucguGGCCCggaucguugCGGGCCGCcuugucGCGCGucguGGUg -3'
miRNA:   3'- -CGGu----UCGGG---------GCCUGGCG------UGCGUu---CCG- -5'
12384 3' -60 NC_003324.1 + 4778 0.66 0.498695
Target:  5'- aGCCAGccGCCCUGG-UCGUuguuGCGCA-GGUc -3'
miRNA:   3'- -CGGUU--CGGGGCCuGGCG----UGCGUuCCG- -5'
12384 3' -60 NC_003324.1 + 41582 0.66 0.498695
Target:  5'- aCCGGGCUUCGGAUUGCucgccacgacgaGCGCccguGGCu -3'
miRNA:   3'- cGGUUCGGGGCCUGGCG------------UGCGuu--CCG- -5'
12384 3' -60 NC_003324.1 + 25308 0.66 0.498695
Target:  5'- gGCCAGGUgCUCGaACCGUcagucgGCGCA-GGCa -3'
miRNA:   3'- -CGGUUCG-GGGCcUGGCG------UGCGUuCCG- -5'
12384 3' -60 NC_003324.1 + 24365 0.66 0.488745
Target:  5'- cGCCAAGCUCCGccgugcccaGAUCG-ACGagAAGGCc -3'
miRNA:   3'- -CGGUUCGGGGC---------CUGGCgUGCg-UUCCG- -5'
12384 3' -60 NC_003324.1 + 33362 0.66 0.488745
Target:  5'- uGCguGGUUgCCGGcuCCGCGCGCAAcuccGGCc -3'
miRNA:   3'- -CGguUCGG-GGCCu-GGCGUGCGUU----CCG- -5'
12384 3' -60 NC_003324.1 + 8177 0.66 0.488745
Target:  5'- gGCCAGuCCCUGcucacugcccGGCgGCGCGCGccuGGCa -3'
miRNA:   3'- -CGGUUcGGGGC----------CUGgCGUGCGUu--CCG- -5'
12384 3' -60 NC_003324.1 + 51825 0.66 0.488745
Target:  5'- cGCCGAGCUuuGGAaCGCAauCAAcGGUc -3'
miRNA:   3'- -CGGUUCGGggCCUgGCGUgcGUU-CCG- -5'
12384 3' -60 NC_003324.1 + 9658 0.66 0.488745
Target:  5'- cGCCAAcGCgCUGGGCgGCGugggGCcGGGCg -3'
miRNA:   3'- -CGGUU-CGgGGCCUGgCGUg---CGuUCCG- -5'
12384 3' -60 NC_003324.1 + 14694 0.66 0.478889
Target:  5'- gGCCGuAGCUCCGG-CCGcCACGCu---- -3'
miRNA:   3'- -CGGU-UCGGGGCCuGGC-GUGCGuuccg -5'
12384 3' -60 NC_003324.1 + 34621 0.66 0.473023
Target:  5'- cGUCGcAGCUCCGGGaggcgcugggcgauuCCGCugGC--GGCa -3'
miRNA:   3'- -CGGU-UCGGGGCCU---------------GGCGugCGuuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.