miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12384 3' -60 NC_003324.1 + 53117 0.68 0.352776
Target:  5'- gGCCAgacggucuGGCUCCccgaccguaaGGGCCGCAUcaucCGAGGCa -3'
miRNA:   3'- -CGGU--------UCGGGG----------CCUGGCGUGc---GUUCCG- -5'
12384 3' -60 NC_003324.1 + 47080 0.7 0.299138
Target:  5'- cGCCAAGUagaCCCcGACaCGUGCGgCGAGGUg -3'
miRNA:   3'- -CGGUUCG---GGGcCUG-GCGUGC-GUUCCG- -5'
12384 3' -60 NC_003324.1 + 16096 0.69 0.304206
Target:  5'- aGCgAAGagaUCGGACUGCagcgaggugguccuGCGCAGGGCg -3'
miRNA:   3'- -CGgUUCgg-GGCCUGGCG--------------UGCGUUCCG- -5'
12384 3' -60 NC_003324.1 + 55031 0.69 0.307132
Target:  5'- cGCCGGGCaggcaaggcggacggCUGGGCUGC-CGCGAcGGCg -3'
miRNA:   3'- -CGGUUCGg--------------GGCCUGGCGuGCGUU-CCG- -5'
12384 3' -60 NC_003324.1 + 1708 0.69 0.321321
Target:  5'- uCCAcGCCuuGGACCGagcuCGaCGAGGUg -3'
miRNA:   3'- cGGUuCGGggCCUGGCgu--GC-GUUCCG- -5'
12384 3' -60 NC_003324.1 + 35382 0.69 0.328984
Target:  5'- uGCUGcAGCCUgcuCGGccGCCGCGCGCAuGGUu -3'
miRNA:   3'- -CGGU-UCGGG---GCC--UGGCGUGCGUuCCG- -5'
12384 3' -60 NC_003324.1 + 5542 0.69 0.328984
Target:  5'- aUCAAGuUCCCGGuuGCCGC-CGCAaccuucgccgcGGGCg -3'
miRNA:   3'- cGGUUC-GGGGCC--UGGCGuGCGU-----------UCCG- -5'
12384 3' -60 NC_003324.1 + 50033 0.69 0.328984
Target:  5'- gGCCGcugaucGGCUCCGGuuuCCGCcCGUAucucgcGGGCg -3'
miRNA:   3'- -CGGU------UCGGGGCCu--GGCGuGCGU------UCCG- -5'
12384 3' -60 NC_003324.1 + 36755 0.69 0.344712
Target:  5'- uGCgAGGCCCgUGGAgCGCugGCc-GGUg -3'
miRNA:   3'- -CGgUUCGGG-GCCUgGCGugCGuuCCG- -5'
12384 3' -60 NC_003324.1 + 7695 0.7 0.299138
Target:  5'- cGCCGA-CCCCGGAaacaCCgGCGCGaaCGAGGUc -3'
miRNA:   3'- -CGGUUcGGGGCCU----GG-CGUGC--GUUCCG- -5'
12384 3' -60 NC_003324.1 + 32119 0.7 0.276128
Target:  5'- gGCCGAgugccuuggucuccGCCUCGGGCCGgGcCGCcccGGGCu -3'
miRNA:   3'- -CGGUU--------------CGGGGCCUGGCgU-GCGu--UCCG- -5'
12384 3' -60 NC_003324.1 + 49482 0.7 0.264836
Target:  5'- uGCCAAgGUgCCGGuCCGCaACG-AGGGCg -3'
miRNA:   3'- -CGGUU-CGgGGCCuGGCG-UGCgUUCCG- -5'
12384 3' -60 NC_003324.1 + 22623 0.78 0.07614
Target:  5'- uGCCGAGCCCCGcGACgCGC-UGCAuagAGGUg -3'
miRNA:   3'- -CGGUUCGGGGC-CUG-GCGuGCGU---UCCG- -5'
12384 3' -60 NC_003324.1 + 50387 0.76 0.113102
Target:  5'- cGCCGuuGUCCCGGGCCGCgacauGuucggugaacccugcCGCAAGGCg -3'
miRNA:   3'- -CGGUu-CGGGGCCUGGCG-----U---------------GCGUUCCG- -5'
12384 3' -60 NC_003324.1 + 27819 0.74 0.142605
Target:  5'- cGCCGAGCCCCuuccaGCCGCugGUguaguugucGAGGUa -3'
miRNA:   3'- -CGGUUCGGGGcc---UGGCGugCG---------UUCCG- -5'
12384 3' -60 NC_003324.1 + 39576 0.74 0.154459
Target:  5'- cGCCAcgucagcaccAGCCuCCGGAUCGUccuCGaCAGGGCg -3'
miRNA:   3'- -CGGU----------UCGG-GGCCUGGCGu--GC-GUUCCG- -5'
12384 3' -60 NC_003324.1 + 31241 0.72 0.222257
Target:  5'- cGCCAGcGCCgCCGG-CCGCACugcgcguuuuuGCGGcGGCg -3'
miRNA:   3'- -CGGUU-CGG-GGCCuGGCGUG-----------CGUU-CCG- -5'
12384 3' -60 NC_003324.1 + 42641 0.71 0.239746
Target:  5'- cGCCGGGCg-CGGAuCUGCAacaGCAAGGCc -3'
miRNA:   3'- -CGGUUCGggGCCU-GGCGUg--CGUUCCG- -5'
12384 3' -60 NC_003324.1 + 4871 0.71 0.245826
Target:  5'- gGUCGAGCCCUguucauGGGCCGuCAgGCu-GGCg -3'
miRNA:   3'- -CGGUUCGGGG------CCUGGC-GUgCGuuCCG- -5'
12384 3' -60 NC_003324.1 + 20766 0.71 0.25837
Target:  5'- gGCCAugcGCUccuuguccaccgCCGGAaCGUugGCGAGGCg -3'
miRNA:   3'- -CGGUu--CGG------------GGCCUgGCGugCGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.