miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12384 3' -60 NC_003324.1 + 29840 0.66 0.508735
Target:  5'- aGCCGAuCCuuGGG-CGCAU-CGAGGCg -3'
miRNA:   3'- -CGGUUcGGggCCUgGCGUGcGUUCCG- -5'
12384 3' -60 NC_003324.1 + 39473 0.68 0.395064
Target:  5'- uUCAAGCCCaaCGaGCCGCAgGCAAGcuGCu -3'
miRNA:   3'- cGGUUCGGG--GCcUGGCGUgCGUUC--CG- -5'
12384 3' -60 NC_003324.1 + 7865 0.68 0.37776
Target:  5'- cGCCGcggcggcaaAGCCCguUGcGAUCGCGCcucccuGCGAGGCg -3'
miRNA:   3'- -CGGU---------UCGGG--GC-CUGGCGUG------CGUUCCG- -5'
12384 3' -60 NC_003324.1 + 40343 1.14 0.000174
Target:  5'- cGCCAAGCCCCGGACCGCACGCAAGGCg -3'
miRNA:   3'- -CGGUUCGGGGCCUGGCGUGCGUUCCG- -5'
12384 3' -60 NC_003324.1 + 4778 0.66 0.498695
Target:  5'- aGCCAGccGCCCUGG-UCGUuguuGCGCA-GGUc -3'
miRNA:   3'- -CGGUU--CGGGGCCuGGCG----UGCGUuCCG- -5'
12384 3' -60 NC_003324.1 + 24365 0.66 0.488745
Target:  5'- cGCCAAGCUCCGccgugcccaGAUCG-ACGagAAGGCc -3'
miRNA:   3'- -CGGUUCGGGGC---------CUGGCgUGCg-UUCCG- -5'
12384 3' -60 NC_003324.1 + 34621 0.66 0.473023
Target:  5'- cGUCGcAGCUCCGGGaggcgcugggcgauuCCGCugGC--GGCa -3'
miRNA:   3'- -CGGU-UCGGGGCCU---------------GGCGugCGuuCCG- -5'
12384 3' -60 NC_003324.1 + 53567 0.66 0.469132
Target:  5'- cGCCGgcauucGGCCUCGGcuuCCGCGCGgGuguacuugccGGCg -3'
miRNA:   3'- -CGGU------UCGGGGCCu--GGCGUGCgUu---------CCG- -5'
12384 3' -60 NC_003324.1 + 52571 0.66 0.459478
Target:  5'- uCCGGGaaCCCGGAUCaCGCGCAGGacGCg -3'
miRNA:   3'- cGGUUCg-GGGCCUGGcGUGCGUUC--CG- -5'
12384 3' -60 NC_003324.1 + 18776 0.68 0.395064
Target:  5'- aGUCGAuGCCCgaccuuuCCGCACGCAAGcGCu -3'
miRNA:   3'- -CGGUU-CGGGgccu---GGCGUGCGUUC-CG- -5'
12384 3' -60 NC_003324.1 + 21928 0.67 0.440492
Target:  5'- cGCCGAGgaggCCCGG-CUGCGCgaacugauGCAgaAGGCg -3'
miRNA:   3'- -CGGUUCg---GGGCCuGGCGUG--------CGU--UCCG- -5'
12384 3' -60 NC_003324.1 + 17512 0.66 0.459478
Target:  5'- aCCGGGCUCCGcgucaGACCG-ACG-AGGGCg -3'
miRNA:   3'- cGGUUCGGGGC-----CUGGCgUGCgUUCCG- -5'
12384 3' -60 NC_003324.1 + 30061 0.66 0.508735
Target:  5'- gGCCGGGaucgaugcggaCCCGGcugccGCCGCuACGCAGGacGCc -3'
miRNA:   3'- -CGGUUCg----------GGGCC-----UGGCG-UGCGUUC--CG- -5'
12384 3' -60 NC_003324.1 + 20286 0.67 0.431168
Target:  5'- uGCC-GGCCauaCCGGGCgcguuaCGCGCGCcucucugaccGAGGCu -3'
miRNA:   3'- -CGGuUCGG---GGCCUG------GCGUGCG----------UUCCG- -5'
12384 3' -60 NC_003324.1 + 25308 0.66 0.498695
Target:  5'- gGCCAGGUgCUCGaACCGUcagucgGCGCA-GGCa -3'
miRNA:   3'- -CGGUUCG-GGGCcUGGCG------UGCGUuCCG- -5'
12384 3' -60 NC_003324.1 + 27532 0.66 0.466225
Target:  5'- cGCCGcaucccgauAGCCCCGuugccuaucaGAUgGCcaagggauggcgugACGCAAGGCc -3'
miRNA:   3'- -CGGU---------UCGGGGC----------CUGgCG--------------UGCGUUCCG- -5'
12384 3' -60 NC_003324.1 + 47723 0.67 0.403906
Target:  5'- uGCCAcagcucgacgauGGCggCCCGGucGCCGuCAUGCGcGGCg -3'
miRNA:   3'- -CGGU------------UCG--GGGCC--UGGC-GUGCGUuCCG- -5'
12384 3' -60 NC_003324.1 + 26007 0.68 0.394187
Target:  5'- uGCCAAGCUcaucgccuggcauCCGGAgguaUUGCAggaccUGCAGGGCu -3'
miRNA:   3'- -CGGUUCGG-------------GGCCU----GGCGU-----GCGUUCCG- -5'
12384 3' -60 NC_003324.1 + 41582 0.66 0.498695
Target:  5'- aCCGGGCUUCGGAUUGCucgccacgacgaGCGCccguGGCu -3'
miRNA:   3'- cGGUUCGGGGCCUGGCG------------UGCGuu--CCG- -5'
12384 3' -60 NC_003324.1 + 14694 0.66 0.478889
Target:  5'- gGCCGuAGCUCCGG-CCGcCACGCu---- -3'
miRNA:   3'- -CGGU-UCGGGGCCuGGC-GUGCGuuccg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.