miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12384 3' -60 NC_003324.1 + 16096 0.69 0.304206
Target:  5'- aGCgAAGagaUCGGACUGCagcgaggugguccuGCGCAGGGCg -3'
miRNA:   3'- -CGgUUCgg-GGCCUGGCG--------------UGCGUUCCG- -5'
12384 3' -60 NC_003324.1 + 16152 0.68 0.369301
Target:  5'- gGCCGcGCCa-GGcAUCGCugGCAccgAGGCg -3'
miRNA:   3'- -CGGUuCGGggCC-UGGCGugCGU---UCCG- -5'
12384 3' -60 NC_003324.1 + 16233 0.67 0.440492
Target:  5'- gGCCGuGCCgaCGcGGCCa-GCGCAGGGCc -3'
miRNA:   3'- -CGGUuCGGg-GC-CUGGcgUGCGUUCCG- -5'
12384 3' -60 NC_003324.1 + 16623 0.69 0.321321
Target:  5'- aGCC-AGCCCCucACCcucucgccgaGCACGCAcAGGCc -3'
miRNA:   3'- -CGGuUCGGGGccUGG----------CGUGCGU-UCCG- -5'
12384 3' -60 NC_003324.1 + 17512 0.66 0.459478
Target:  5'- aCCGGGCUCCGcgucaGACCG-ACG-AGGGCg -3'
miRNA:   3'- cGGUUCGGGGC-----CUGGCgUGCgUUCCG- -5'
12384 3' -60 NC_003324.1 + 18776 0.68 0.395064
Target:  5'- aGUCGAuGCCCgaccuuuCCGCACGCAAGcGCu -3'
miRNA:   3'- -CGGUU-CGGGgccu---GGCGUGCGUUC-CG- -5'
12384 3' -60 NC_003324.1 + 20177 0.67 0.439555
Target:  5'- uGCCGgcAGCCUCGGucagagaGgCGCGCGUAAcGCg -3'
miRNA:   3'- -CGGU--UCGGGGCC-------UgGCGUGCGUUcCG- -5'
12384 3' -60 NC_003324.1 + 20286 0.67 0.431168
Target:  5'- uGCC-GGCCauaCCGGGCgcguuaCGCGCGCcucucugaccGAGGCu -3'
miRNA:   3'- -CGGuUCGG---GGCCUG------GCGUGCG----------UUCCG- -5'
12384 3' -60 NC_003324.1 + 20515 0.67 0.440492
Target:  5'- gGCCgGAGCUCCGGccaugaguACCGCuuGCGAucgacgaugacGGCu -3'
miRNA:   3'- -CGG-UUCGGGGCC--------UGGCGugCGUU-----------CCG- -5'
12384 3' -60 NC_003324.1 + 20766 0.71 0.25837
Target:  5'- gGCCAugcGCUccuuguccaccgCCGGAaCGUugGCGAGGCg -3'
miRNA:   3'- -CGGUu--CGG------------GGCCUgGCGugCGUUCCG- -5'
12384 3' -60 NC_003324.1 + 21443 0.68 0.360972
Target:  5'- gGCUAAGgCCCGGuucauCCaGCAggucCGCAAGGg -3'
miRNA:   3'- -CGGUUCgGGGCCu----GG-CGU----GCGUUCCg -5'
12384 3' -60 NC_003324.1 + 21928 0.67 0.440492
Target:  5'- cGCCGAGgaggCCCGG-CUGCGCgaacugauGCAgaAGGCg -3'
miRNA:   3'- -CGGUUCg---GGGCCuGGCGUG--------CGU--UCCG- -5'
12384 3' -60 NC_003324.1 + 22121 0.71 0.245826
Target:  5'- uGCUcaAGGUCauguCGGA-CGCGCGCAAGGCu -3'
miRNA:   3'- -CGG--UUCGGg---GCCUgGCGUGCGUUCCG- -5'
12384 3' -60 NC_003324.1 + 22623 0.78 0.07614
Target:  5'- uGCCGAGCCCCGcGACgCGC-UGCAuagAGGUg -3'
miRNA:   3'- -CGGUUCGGGGC-CUG-GCGuGCGU---UCCG- -5'
12384 3' -60 NC_003324.1 + 23628 0.69 0.336781
Target:  5'- cGCCGAGCgcgCCC--GCCGcCACGCugugGGGCa -3'
miRNA:   3'- -CGGUUCG---GGGccUGGC-GUGCGu---UCCG- -5'
12384 3' -60 NC_003324.1 + 24365 0.66 0.488745
Target:  5'- cGCCAAGCUCCGccgugcccaGAUCG-ACGagAAGGCc -3'
miRNA:   3'- -CGGUUCGGGGC---------CUGGCgUGCg-UUCCG- -5'
12384 3' -60 NC_003324.1 + 25237 0.66 0.507727
Target:  5'- uUCGAGCaCCUGG-CCGCccuuaaaGC-CAAGGCg -3'
miRNA:   3'- cGGUUCG-GGGCCuGGCG-------UGcGUUCCG- -5'
12384 3' -60 NC_003324.1 + 25308 0.66 0.498695
Target:  5'- gGCCAGGUgCUCGaACCGUcagucgGCGCA-GGCa -3'
miRNA:   3'- -CGGUUCG-GGGCcUGGCG------UGCGUuCCG- -5'
12384 3' -60 NC_003324.1 + 26007 0.68 0.394187
Target:  5'- uGCCAAGCUcaucgccuggcauCCGGAgguaUUGCAggaccUGCAGGGCu -3'
miRNA:   3'- -CGGUUCGG-------------GGCCU----GGCGU-----GCGUUCCG- -5'
12384 3' -60 NC_003324.1 + 27532 0.66 0.466225
Target:  5'- cGCCGcaucccgauAGCCCCGuugccuaucaGAUgGCcaagggauggcgugACGCAAGGCc -3'
miRNA:   3'- -CGGU---------UCGGGGC----------CUGgCG--------------UGCGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.