miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12384 3' -60 NC_003324.1 + 30061 0.66 0.508735
Target:  5'- gGCCGGGaucgaugcggaCCCGGcugccGCCGCuACGCAGGacGCc -3'
miRNA:   3'- -CGGUUCg----------GGGCC-----UGGCG-UGCGUUC--CG- -5'
12384 3' -60 NC_003324.1 + 4553 0.66 0.498695
Target:  5'- aGCCGcGCCgUGaucGAgCGCGCGCAgguccAGGCc -3'
miRNA:   3'- -CGGUuCGGgGC---CUgGCGUGCGU-----UCCG- -5'
12384 3' -60 NC_003324.1 + 24365 0.66 0.488745
Target:  5'- cGCCAAGCUCCGccgugcccaGAUCG-ACGagAAGGCc -3'
miRNA:   3'- -CGGUUCGGGGC---------CUGGCgUGCg-UUCCG- -5'
12384 3' -60 NC_003324.1 + 4778 0.66 0.498695
Target:  5'- aGCCAGccGCCCUGG-UCGUuguuGCGCA-GGUc -3'
miRNA:   3'- -CGGUU--CGGGGCCuGGCG----UGCGUuCCG- -5'
12384 3' -60 NC_003324.1 + 41582 0.66 0.498695
Target:  5'- aCCGGGCUUCGGAUUGCucgccacgacgaGCGCccguGGCu -3'
miRNA:   3'- cGGUUCGGGGCCUGGCG------------UGCGuu--CCG- -5'
12384 3' -60 NC_003324.1 + 20286 0.67 0.431168
Target:  5'- uGCC-GGCCauaCCGGGCgcguuaCGCGCGCcucucugaccGAGGCu -3'
miRNA:   3'- -CGGuUCGG---GGCCUG------GCGUGCG----------UUCCG- -5'
12384 3' -60 NC_003324.1 + 31163 0.67 0.44993
Target:  5'- cGCgGAGCugCCCGGcCUGCGC-CAucAGGCc -3'
miRNA:   3'- -CGgUUCG--GGGCCuGGCGUGcGU--UCCG- -5'
12384 3' -60 NC_003324.1 + 8543 0.67 0.447087
Target:  5'- cGCCAGcggauaCCCUGGACuacgacaucgauuuCGCGCGCu-GGCu -3'
miRNA:   3'- -CGGUUc-----GGGGCCUG--------------GCGUGCGuuCCG- -5'
12384 3' -60 NC_003324.1 + 16233 0.67 0.440492
Target:  5'- gGCCGuGCCgaCGcGGCCa-GCGCAGGGCc -3'
miRNA:   3'- -CGGUuCGGg-GC-CUGGcgUGCGUUCCG- -5'
12384 3' -60 NC_003324.1 + 20515 0.67 0.440492
Target:  5'- gGCCgGAGCUCCGGccaugaguACCGCuuGCGAucgacgaugacGGCu -3'
miRNA:   3'- -CGG-UUCGGGGCC--------UGGCGugCGUU-----------CCG- -5'
12384 3' -60 NC_003324.1 + 20177 0.67 0.439555
Target:  5'- uGCCGgcAGCCUCGGucagagaGgCGCGCGUAAcGCg -3'
miRNA:   3'- -CGGU--UCGGGGCC-------UgGCGUGCGUUcCG- -5'
12384 3' -60 NC_003324.1 + 21928 0.67 0.440492
Target:  5'- cGCCGAGgaggCCCGG-CUGCGCgaacugauGCAgaAGGCg -3'
miRNA:   3'- -CGGUUCg---GGGCCuGGCGUG--------CGU--UCCG- -5'
12384 3' -60 NC_003324.1 + 47723 0.67 0.403906
Target:  5'- uGCCAcagcucgacgauGGCggCCCGGucGCCGuCAUGCGcGGCg -3'
miRNA:   3'- -CGGU------------UCG--GGGCC--UGGC-GUGCGUuCCG- -5'
12384 3' -60 NC_003324.1 + 2108 0.67 0.440492
Target:  5'- uGCgGAGCaCCUGGAgCGU-CGUAAGGa -3'
miRNA:   3'- -CGgUUCG-GGGCCUgGCGuGCGUUCCg -5'
12384 3' -60 NC_003324.1 + 29917 0.67 0.403017
Target:  5'- gGCCAugcuggacggcgcGGCCCaCGGuCCGgACGggcgaGGGGCg -3'
miRNA:   3'- -CGGU-------------UCGGG-GCCuGGCgUGCg----UUCCG- -5'
12384 3' -60 NC_003324.1 + 31819 0.67 0.403906
Target:  5'- aGCCAAGCCUuacgauCGaGACCGUACuucuuGGCa -3'
miRNA:   3'- -CGGUUCGGG------GC-CUGGCGUGcguu-CCG- -5'
12384 3' -60 NC_003324.1 + 30489 0.67 0.412873
Target:  5'- cGCCGagcaGGCCCuCGGAaaCUGCGCcuGCGAccguGGCg -3'
miRNA:   3'- -CGGU----UCGGG-GCCU--GGCGUG--CGUU----CCG- -5'
12384 3' -60 NC_003324.1 + 32042 0.67 0.421961
Target:  5'- uGCCGgcggcGGCUCaCGG-CCGa--GCAAGGCg -3'
miRNA:   3'- -CGGU-----UCGGG-GCCuGGCgugCGUUCCG- -5'
12384 3' -60 NC_003324.1 + 12284 0.68 0.386348
Target:  5'- -gCGAGCCCUaccGuCCGCAUGCGuGGCc -3'
miRNA:   3'- cgGUUCGGGGc--CuGGCGUGCGUuCCG- -5'
12384 3' -60 NC_003324.1 + 42871 0.68 0.386348
Target:  5'- uGCCGgccGGCCCgCGaggaucugcGACCGagaacgacccaGCGCGGGGCg -3'
miRNA:   3'- -CGGU---UCGGG-GC---------CUGGCg----------UGCGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.