miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12384 3' -60 NC_003324.1 + 47080 0.7 0.299138
Target:  5'- cGCCAAGUagaCCCcGACaCGUGCGgCGAGGUg -3'
miRNA:   3'- -CGGUUCG---GGGcCUG-GCGUGC-GUUCCG- -5'
12384 3' -60 NC_003324.1 + 36755 0.69 0.344712
Target:  5'- uGCgAGGCCCgUGGAgCGCugGCc-GGUg -3'
miRNA:   3'- -CGgUUCGGG-GCCUgGCGugCGuuCCG- -5'
12384 3' -60 NC_003324.1 + 28431 0.69 0.347921
Target:  5'- gGCCGAcgauGUUCCGGGcuacgaggccuacucCCGCAUGCAugcuGGCa -3'
miRNA:   3'- -CGGUU----CGGGGCCU---------------GGCGUGCGUu---CCG- -5'
12384 3' -60 NC_003324.1 + 16096 0.69 0.304206
Target:  5'- aGCgAAGagaUCGGACUGCagcgaggugguccuGCGCAGGGCg -3'
miRNA:   3'- -CGgUUCgg-GGCCUGGCG--------------UGCGUUCCG- -5'
12384 3' -60 NC_003324.1 + 55031 0.69 0.307132
Target:  5'- cGCCGGGCaggcaaggcggacggCUGGGCUGC-CGCGAcGGCg -3'
miRNA:   3'- -CGGUUCGg--------------GGCCUGGCGuGCGUU-CCG- -5'
12384 3' -60 NC_003324.1 + 1708 0.69 0.321321
Target:  5'- uCCAcGCCuuGGACCGagcuCGaCGAGGUg -3'
miRNA:   3'- cGGUuCGGggCCUGGCgu--GC-GUUCCG- -5'
12384 3' -60 NC_003324.1 + 44965 0.69 0.306399
Target:  5'- cCCGcGCCCCGGcguACCGCugacuuuCGUgaAGGGCa -3'
miRNA:   3'- cGGUuCGGGGCC---UGGCGu------GCG--UUCCG- -5'
12384 3' -60 NC_003324.1 + 16623 0.69 0.321321
Target:  5'- aGCC-AGCCCCucACCcucucgccgaGCACGCAcAGGCc -3'
miRNA:   3'- -CGGuUCGGGGccUGG----------CGUGCGU-UCCG- -5'
12384 3' -60 NC_003324.1 + 23628 0.69 0.336781
Target:  5'- cGCCGAGCgcgCCC--GCCGcCACGCugugGGGCa -3'
miRNA:   3'- -CGGUUCG---GGGccUGGC-GUGCGu---UCCG- -5'
12384 3' -60 NC_003324.1 + 35382 0.69 0.328984
Target:  5'- uGCUGcAGCCUgcuCGGccGCCGCGCGCAuGGUu -3'
miRNA:   3'- -CGGU-UCGGG---GCC--UGGCGUGCGUuCCG- -5'
12384 3' -60 NC_003324.1 + 50033 0.69 0.328984
Target:  5'- gGCCGcugaucGGCUCCGGuuuCCGCcCGUAucucgcGGGCg -3'
miRNA:   3'- -CGGU------UCGGGGCCu--GGCGuGCGU------UCCG- -5'
12384 3' -60 NC_003324.1 + 5542 0.69 0.328984
Target:  5'- aUCAAGuUCCCGGuuGCCGC-CGCAaccuucgccgcGGGCg -3'
miRNA:   3'- cGGUUC-GGGGCC--UGGCGuGCGU-----------UCCG- -5'
12384 3' -60 NC_003324.1 + 18776 0.68 0.395064
Target:  5'- aGUCGAuGCCCgaccuuuCCGCACGCAAGcGCu -3'
miRNA:   3'- -CGGUU-CGGGgccu---GGCGUGCGUUC-CG- -5'
12384 3' -60 NC_003324.1 + 52455 0.68 0.369301
Target:  5'- uGCCGcGGCCagaCGGA-UGCAUGCA-GGCg -3'
miRNA:   3'- -CGGU-UCGGg--GCCUgGCGUGCGUuCCG- -5'
12384 3' -60 NC_003324.1 + 53117 0.68 0.352776
Target:  5'- gGCCAgacggucuGGCUCCccgaccguaaGGGCCGCAUcaucCGAGGCa -3'
miRNA:   3'- -CGGU--------UCGGGG----------CCUGGCGUGc---GUUCCG- -5'
12384 3' -60 NC_003324.1 + 16152 0.68 0.369301
Target:  5'- gGCCGcGCCa-GGcAUCGCugGCAccgAGGCg -3'
miRNA:   3'- -CGGUuCGGggCC-UGGCGugCGU---UCCG- -5'
12384 3' -60 NC_003324.1 + 4659 0.68 0.37776
Target:  5'- gGCCGacaucaugcGGgCCUGGACCuGCGCGCGcucgaucacGGCg -3'
miRNA:   3'- -CGGU---------UCgGGGCCUGG-CGUGCGUu--------CCG- -5'
12384 3' -60 NC_003324.1 + 12284 0.68 0.386348
Target:  5'- -gCGAGCCCUaccGuCCGCAUGCGuGGCc -3'
miRNA:   3'- cgGUUCGGGGc--CuGGCGUGCGUuCCG- -5'
12384 3' -60 NC_003324.1 + 14668 0.68 0.360972
Target:  5'- cGCCugcGCCgCCGG-CCGCuuGCGCcggcAGGCc -3'
miRNA:   3'- -CGGuu-CGG-GGCCuGGCG--UGCGu---UCCG- -5'
12384 3' -60 NC_003324.1 + 42871 0.68 0.386348
Target:  5'- uGCCGgccGGCCCgCGaggaucugcGACCGagaacgacccaGCGCGGGGCg -3'
miRNA:   3'- -CGGU---UCGGG-GC---------CUGGCg----------UGCGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.